Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_B18
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    27   3.5  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.5  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    26   6.1  

>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 590 PSPPSRGPQKGFCPTSAPVR 531
           PSPPSR  Q  FC    P R
Sbjct: 161 PSPPSRNEQPAFCVNWCPSR 180


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +2

Query: 290 RIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRDA 412
           R   +E S  S   PVGPP    W P     T+TSL  + A
Sbjct: 128 RFNNAENSGHSNYYPVGPP---EWAPYTRLMTQTSLYAKSA 165


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 424 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRFRAFDS 290
           STV  +P+    +    ++   +  S RPD LP   G R++ F S
Sbjct: 138 STVPTIPSVSKEANDKYFAKLGSINSQRPDDLPPSQGGRYQGFGS 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,990
Number of Sequences: 5004
Number of extensions: 51141
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)