Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_B18
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0281 + 26912419-26913099 33 0.23
02_02_0063 + 6481568-6481570,6481922-6482470 33 0.30
11_07_0002 - 27171791-27172222 32 0.69
09_02_0279 + 6702517-6702948 32 0.69
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 30 2.1
07_03_0315 - 16674660-16674712,16674966-16675158 29 3.7
04_03_0849 + 20265511-20265984,20266452-20266617,20266694-202669... 29 3.7
09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79... 29 4.9
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 29 4.9
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916... 29 4.9
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317... 29 6.5
>05_06_0281 + 26912419-26913099
Length = 226
Score = 33.5 bits (73), Expect = 0.23
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 236 QPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRD 409
+P G P + P P+ ++ +R+P GP W PG+P T+T L G D
Sbjct: 82 RPVGPTPPPPSHPVVPTPTQLAADDDGGLLRRPGGPTPPSPWHPGVP--TQTQLAGGD 137
>02_02_0063 + 6481568-6481570,6481922-6482470
Length = 183
Score = 33.1 bits (72), Expect = 0.30
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = -1
Query: 441 VNRATGRRCIASRPGRLVLVQRGIPGHQRHRLGGPTG 331
V ATGRR A+RPGRLV + + G +R GP G
Sbjct: 127 VTVATGRRDAATRPGRLVAMAATV-GSRREERRGPAG 162
>11_07_0002 - 27171791-27172222
Length = 143
Score = 31.9 bits (69), Expect = 0.69
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 427 RSTVYRVPTRQAGSGPAGYSGTPAAPSGRPDG----LPYRDGRRF 305
RS+ + +AGS PAG G+PA G P G P GR F
Sbjct: 55 RSSAASTSSARAGSTPAGVRGSPAGAGGSPGGGSGSTPVGGGRSF 99
>09_02_0279 + 6702517-6702948
Length = 143
Score = 31.9 bits (69), Expect = 0.69
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 427 RSTVYRVPTRQAGSGPAGYSGTPAAPSGRPDG----LPYRDGRRF 305
RS+ + +AGS PAG G+PA G P G P GR F
Sbjct: 55 RSSAASTSSARAGSTPAGVRGSPAGAGGSPGGGSGSTPVGGGRSF 99
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 30.3 bits (65), Expect = 2.1
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Frame = +2
Query: 179 DPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCR 358
D + G+ PD QP A P+D QP PS + TS R+ G
Sbjct: 188 DAVHGEQPDGERDADEHRGQPHQRAAPRDVQPPSPSS--SPATTSPAHPRRAHGQVLLGS 245
Query: 359 WCPGIPRW-TRTSLPGRDAIHRRPVALF 439
P P W + LP R R P+ F
Sbjct: 246 H-PRGPHWRVQGHLPQRQGPRRVPIDFF 272
>07_03_0315 - 16674660-16674712,16674966-16675158
Length = 81
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 429 TGRRCIASRPGRLVLVQRGIPGHQRHRLGGPTGCRTETADVSEPSIRLEGSVG 271
TG + + S GR +L I +R R+G P GC+ + S I L VG
Sbjct: 11 TGEKGVRSGVGRDILRDEKIK--ERKRMGQPAGCQADLLICSPVKINLFSQVG 61
>04_03_0849 +
20265511-20265984,20266452-20266617,20266694-20266905,
20267154-20267647,20267732-20267780,20267922-20268251
Length = 574
Score = 29.5 bits (63), Expect = 3.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 317 VSVRQPVGPPRRCRWCPGIPRWTR 388
+ + + V PP R WCP RW R
Sbjct: 1 MEIARVVAPPLRLAWCPASRRWGR 24
>09_01_0043 +
790859-790873,791410-791603,792521-792605,792719-793075
Length = 216
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 397 QAGSGPAGYSGTPAAPSGRPDGLPYRDG 314
++GSG AG G+ A GR DG RDG
Sbjct: 118 RSGSGKAGCVGSRADQDGRLDGREVRDG 145
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 174 RPIPSEVRTRMR*GGYRGQHYNQTARLTPR 263
R PSE+R+R R G RG+ Y+Q +PR
Sbjct: 121 RKKPSEMRSRDRISGSRGRSYDQRYSRSPR 150
>07_03_0603 -
19890664-19890823,19891104-19891329,19891498-19891636,
19891849-19891942,19892291-19892311,19892506-19892941,
19893133-19893280,19893369-19893476,19893543-19893659,
19893960-19894016,19894488-19894553,19895140-19895328,
19895410-19895523,19895684-19895766,19895857-19896322,
19896832-19897476
Length = 1022
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +1
Query: 139 PLNDSPXTLTPDVRSPP--RSEPG*GRGVTAVNTTTRRRGSPQGRPADGAFEA 291
P D TP+ R+PP +S + + TTRRR P P GA A
Sbjct: 11 PFRDLSNLRTPNPRAPPNPKSSASKEEPLPSATPTTRRRRGPPPPPRPGAATA 63
>07_03_1573 +
27829967-27830338,27830821-27831510,27831594-27831781,
27832286-27832318,27832364-27832605,27833178-27833320,
27833649-27833825,27834104-27834256,27834639-27834694,
27834998-27835157,27835301-27835348
Length = 753
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 145 NDSPXTLTPDVRSPPRSEPG*GRG---VTAVNTTTRRRGSPQGRPA 273
N +P P R+PP PG G G + ++ RRRG P G A
Sbjct: 33 NPTPPPPPPRRRTPPPPPPGSGPGPQRPSYLSVALRRRGPPAGSAA 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,541,520
Number of Sequences: 37544
Number of extensions: 501243
Number of successful extensions: 1812
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1809
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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