Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_B18
(876 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 33 0.35
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 33 0.35
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 33 0.35
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z82274-16|CAC70096.1| 1119|Caenorhabditis elegans Hypothetical p... 30 1.9
Z82274-15|CAB05234.2| 1113|Caenorhabditis elegans Hypothetical p... 30 1.9
Z22177-7|CAA80149.1| 171|Caenorhabditis elegans Hypothetical pr... 30 1.9
AL132951-13|CAC70127.1| 1119|Caenorhabditis elegans Hypothetical... 30 1.9
AL132951-12|CAC44311.1| 1113|Caenorhabditis elegans Hypothetical... 30 1.9
AF283323-1|AAG18575.1| 1113|Caenorhabditis elegans synaptojanin ... 30 1.9
AF283322-1|AAG18574.1| 1119|Caenorhabditis elegans synaptojanin ... 30 1.9
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 30 2.5
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 30 2.5
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 29 3.3
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 29 4.4
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 29 4.4
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 29 4.4
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 4.4
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 5.8
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 29 5.8
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 5.8
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 32.7 bits (71), Expect = 0.35
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -2
Query: 149 SFSGWALKSLVPRSAHNTMQIVESHIPRAPLLRG 48
S++GW S+VP+SA++ M ++E + R L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 32.7 bits (71), Expect = 0.35
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -2
Query: 149 SFSGWALKSLVPRSAHNTMQIVESHIPRAPLLRG 48
S++GW S+VP+SA++ M ++E + R L G
Sbjct: 1337 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1370
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 32.7 bits (71), Expect = 0.35
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -2
Query: 149 SFSGWALKSLVPRSAHNTMQIVESHIPRAPLLRG 48
S++GW S+VP+SA++ M ++E + R L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 388 SGPAGYSGTPAAPSGRPDGLPYRDG 314
+GPAG G P AP PDG P +DG
Sbjct: 144 AGPAGPDGAPGAPG--PDGQPGQDG 166
>Z82274-16|CAC70096.1| 1119|Caenorhabditis elegans Hypothetical
protein JC8.10b protein.
Length = 1119
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 605 PLRTYPSPPSRGPQKGFCPTSAPVRGELPP 516
P T P PP+RG G P + PVR PP
Sbjct: 1077 PPSTIPLPPTRGASVGPGPPAVPVRKAPPP 1106
>Z82274-15|CAB05234.2| 1113|Caenorhabditis elegans Hypothetical
protein JC8.10a protein.
Length = 1113
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 605 PLRTYPSPPSRGPQKGFCPTSAPVRGELPP 516
P T P PP+RG G P + PVR PP
Sbjct: 1071 PPSTIPLPPTRGASVGPGPPAVPVRKAPPP 1100
>Z22177-7|CAA80149.1| 171|Caenorhabditis elegans Hypothetical
protein ZK512.8 protein.
Length = 171
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +2
Query: 176 SDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQ-PVGPPRR 352
S+P + DE+ L R + D HP + + +P + E S TSA S PV P
Sbjct: 53 SNPTEFKFMDEIALLKRGRIDKDAPKHPYNRRGQQPMMKKEISVTSAHSNSSLPVRSPAI 112
Query: 353 CRWCPGIP 376
G+P
Sbjct: 113 MTLMGGVP 120
>AL132951-13|CAC70127.1| 1119|Caenorhabditis elegans Hypothetical
protein JC8.10b protein.
Length = 1119
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 605 PLRTYPSPPSRGPQKGFCPTSAPVRGELPP 516
P T P PP+RG G P + PVR PP
Sbjct: 1077 PPSTIPLPPTRGASVGPGPPAVPVRKAPPP 1106
>AL132951-12|CAC44311.1| 1113|Caenorhabditis elegans Hypothetical
protein JC8.10a protein.
Length = 1113
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 605 PLRTYPSPPSRGPQKGFCPTSAPVRGELPP 516
P T P PP+RG G P + PVR PP
Sbjct: 1071 PPSTIPLPPTRGASVGPGPPAVPVRKAPPP 1100
>AF283323-1|AAG18575.1| 1113|Caenorhabditis elegans synaptojanin
UNC-26B protein.
Length = 1113
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 605 PLRTYPSPPSRGPQKGFCPTSAPVRGELPP 516
P T P PP+RG G P + PVR PP
Sbjct: 1071 PPSTIPLPPTRGASVGPGPPAVPVRKAPPP 1100
>AF283322-1|AAG18574.1| 1119|Caenorhabditis elegans synaptojanin
UNC-26A protein.
Length = 1119
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 605 PLRTYPSPPSRGPQKGFCPTSAPVRGELPP 516
P T P PP+RG G P + PVR PP
Sbjct: 1077 PPSTIPLPPTRGASVGPGPPAVPVRKAPPP 1106
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -3
Query: 388 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 308
+GPAG +G P AP G+P G P +DG+R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGQR 198
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 409 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 314
VP +Q SG GY G P P + DG P RDG
Sbjct: 1129 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1164
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 409 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 314
VP +Q SG GY G P P + DG P RDG
Sbjct: 1386 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1421
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 409 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 314
VP +Q SG GY G P P + DG P RDG
Sbjct: 1385 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1420
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -3
Query: 388 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 308
+GPAG +G P AP G+P G P +DG R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGHR 198
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 388 SGPAGYSGTPAAPSGR-PDGLPYRDGRRFR 302
+GP G +GTP P + DG P ++GRR R
Sbjct: 173 AGPQGDAGTPGQPGQQGQDGRPGQNGRRGR 202
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -3
Query: 424 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDG 314
ST +P GP G G P AP P G P +DG
Sbjct: 128 STSECIPCPAGAPGPQGPDGAPGAPG--PSGQPGQDG 162
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 385 GPAGYSGTPAAPSG-RPDGLPYRDG 314
GP+G SG PA P PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 385 GPAGYSGTPAAPSG-RPDGLPYRDG 314
GP+G SG PA P PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -3
Query: 385 GPAGYSGTPAAPSGRP-DGLPYRDGRRFRAFD 293
GP GY G P P R DG P +G A+D
Sbjct: 144 GPTGYPGAPGEPGSRGLDGRPGANGVTLIAYD 175
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 605 PLRTYPSPPSRGPQKGFCPTSAPVRGELPPV 513
P +PPS GP F P+ AP G +PPV
Sbjct: 499 PFNPSGAPPSGGPPGPFDPSGAPPSG-MPPV 528
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -2
Query: 605 PLRTYPSPPSRGPQKGFCPTSAPVRGELP-PVKVKGRP 495
P +PPS GP F P+ AP G P P G P
Sbjct: 199 PFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAP 236
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -3
Query: 385 GPAGYSGTPAAPSGRP--DGLPYRDGRR 308
GPAG +G P AP G P DG P ++G+R
Sbjct: 173 GPAGDAGAPGAP-GAPGNDGQPGQNGQR 199
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 385 GPAGYSGTPAAPSGRP--DGLPYRDGRRFRAFDSP 287
GPAG +G+P P G P G P R G+R R P
Sbjct: 173 GPAGDAGSPGQP-GHPGSPGNPGRGGQRSRGLPGP 206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,706,025
Number of Sequences: 27780
Number of extensions: 352779
Number of successful extensions: 1680
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1669
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -