Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_B12
         (866 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80837-2|AAB37902.1|  315|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U51993-2|AAB36852.2|  190|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81113-5|CAB03282.3|  404|Caenorhabditis elegans Hypothetical pr...    28   9.9  
AF164430-1|AAF82632.1|  404|Caenorhabditis elegans LIS-1 protein.      28   9.9  

>U80837-2|AAB37902.1|  315|Caenorhabditis elegans Hypothetical
           protein F07E5.2 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 307 SLLQINLNILREYNSMPPMNTSLTQNFEIFVFHANRFTILKV 182
           S+L  NL+ L+      P++ +LT N   F  H N FT+ ++
Sbjct: 180 SVLSRNLDGLKVNTKDVPLDDALTSNSLSFAMHRNSFTMKEI 221


>U51993-2|AAB36852.2|  190|Caenorhabditis elegans Hypothetical
           protein F56F10.3 protein.
          Length = 190

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/66 (24%), Positives = 26/66 (39%)
 Frame = -2

Query: 436 MLLVCWGTNLIFISHTXXXXXXXXXXXXXVINETKHRSWRTKHSLLQINLNILREYNSMP 257
           ++++CWG  +    H               + ETK+   R +H  L I+ N     N + 
Sbjct: 64  LMILCWGPGMASSVHDHTDAHCFVKILDGELTETKYAWPRKRHVPLDISENKTYGMNGVS 123

Query: 256 PMNTSL 239
            MN  L
Sbjct: 124 YMNDEL 129


>Z81113-5|CAB03282.3|  404|Caenorhabditis elegans Hypothetical
           protein T03F6.5 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 756 KHLVIXISWASIVNWTKVSSRQXIGNGSHFL 664
           +H V  + WA    +T V+ +Q  GN +H L
Sbjct: 275 EHAVECVEWAPDTAYTNVTGQQPEGNSTHIL 305


>AF164430-1|AAF82632.1|  404|Caenorhabditis elegans LIS-1 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 756 KHLVIXISWASIVNWTKVSSRQXIGNGSHFL 664
           +H V  + WA    +T V+ +Q  GN +H L
Sbjct: 275 EHAVECVEWAPDTAYTNVTGQQPEGNSTHIL 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,228,110
Number of Sequences: 27780
Number of extensions: 342156
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)