Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_B11
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    27   2.5  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   4.4  
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    26   5.8  

>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 496 PTDRPARWPYPAVAPPPTQDTQTLQYR 576
           P DRP   P   +A P T +T+  QYR
Sbjct: 312 PRDRPPLIPISRIAVPSTIETEERQYR 338


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 526 GTATAPVGPWGSRDPLRSAASISS 455
           G  TAP  P GS  PL +AAS +S
Sbjct: 279 GKTTAPPPPHGSTTPLPAAASYTS 302


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 333 VTVKG*KTGANR*LIEKKKPIFD 265
           +TVKG  T  N+ L E K+P+FD
Sbjct: 313 ITVKGTPTTYNKDLQEDKEPLFD 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,067
Number of Sequences: 5004
Number of extensions: 57571
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)