Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_B11
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0365 - 43071448-43071568,43071673-43072514                       31   0.86 
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302...    29   3.5  
03_03_0278 - 16126803-16129049                                         29   4.6  

>01_07_0365 - 43071448-43071568,43071673-43072514
          Length = 320

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 703 SIACQYTYKRNV-IMWADASFADVVPSPNTNXGRY 602
           S + + TY+RN   +W D +  D++P+P+TN   Y
Sbjct: 75  SWSAKTTYRRNAGYVWQDLTADDLIPAPSTNHEEY 109


>03_01_0389 +
           3021849-3022136,3022237-3022753,3022835-3022988,
           3023076-3023166,3024556-3024627,3026366-3026689
          Length = 481

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +1

Query: 472 PIVEGPGSPTDRPARWP-YPAVA-PPPTQDTQT 564
           P+V  PGSP      WP  P +A PPPT  T T
Sbjct: 47  PVVVAPGSPIMDADSWPALPGLASPPPTTLTPT 79


>03_03_0278 - 16126803-16129049
          Length = 748

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
 Frame = +1

Query: 487 PGSPTDRPARWPYPAVAPPPTQDTQ----TLQYRH*QYYCSKCIYRXSCSEMALRRQTTR 654
           P  P   P + P P  A PPT  T      + Y + + Y +  +   +C E  L ++   
Sbjct: 186 PPPPPPPPRQAPAPPPAKPPTFWTSCNKCKMNYEYLKVYLNHNLLCPTCREPFLAQEVPM 245

Query: 655 PPT 663
           PPT
Sbjct: 246 PPT 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,766,466
Number of Sequences: 37544
Number of extensions: 338992
Number of successful extensions: 968
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)