Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_B10
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   161   1e-40
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    81   2e-16
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    78   2e-15
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    54   3e-08
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    27   2.4  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   3.1  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    26   7.2  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  161 bits (391), Expect = 1e-40
 Identities = 71/95 (74%), Positives = 83/95 (87%)
 Frame = -1

Query: 701 RTRTRATFVEWIPXNLKVXVCDIPPRGLKMSATFIGNSTAIQEIFKRISEQFTAMFRRRA 522
           +T+  A FVEWIP N+   VC +PP+ LKMSATFIGNST+IQEIF+R+ +QF+AMFRR+A
Sbjct: 334 QTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKA 393

Query: 521 FLHWYTGEGMDEMEFTEAASNMADLISEYQQYQEA 417
           FLHWYTGEGMDEMEFTEA SNM DL+SEYQQYQEA
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEA 428



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 15/25 (60%), Positives = 22/25 (88%)
 Frame = -3

Query: 753 FRXRMSMREVDDQILAIQNKNSSYF 679
           FR ++SM+EVD+QI ++Q KNS+YF
Sbjct: 317 FRGKVSMKEVDEQIRSVQTKNSAYF 341


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 8/92 (8%)
 Frame = -1

Query: 680 FVEWIPXNLKVXVCDIPPRGLKMS--------ATFIGNSTAIQEIFKRISEQFTAMFRRR 525
           FV+W P   K+ +CD PP+ ++ S           + N+T+I E + R+  +F  M+ +R
Sbjct: 343 FVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKR 402

Query: 524 AFLHWYTGEGMDEMEFTEAASNMADLISEYQQ 429
           AF+HWY GEGM+E EF+EA  ++A L  +Y++
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 8/99 (8%)
 Frame = -1

Query: 701 RTRTRATFVEWIPXNLKVXVCDIPPRGLKMSAT--------FIGNSTAIQEIFKRISEQF 546
           ++R    FV+W P   K+ +C  PP+ +  S           + N+T+I E + R+  +F
Sbjct: 340 KSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKF 399

Query: 545 TAMFRRRAFLHWYTGEGMDEMEFTEAASNMADLISEYQQ 429
             M+ +RAF+HWY GEGM+E EF+EA  ++A L  +Y++
Sbjct: 400 DLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
 Frame = -1

Query: 701 RTRTRATFVEWIPXNLKVXVCDIPP---RGLKMSATFIGNSTAIQEIFKRISEQFTAMFR 531
           R R  A+F+ W P +++V +    P      ++S   + N T+I  +FKR  +Q+  + +
Sbjct: 341 RERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRK 400

Query: 530 RRAFLHWYTGEGM---DEMEFTEAASNMADLISEYQQYQE 420
           R AFL  Y  E +   D  EF  +   +ADLI+EY+  ++
Sbjct: 401 RNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYEACED 440


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 145 DTANFSLPFSSISRHLNTLSLS 80
           D A+F  PF+ +S HL++ SLS
Sbjct: 127 DNASFHRPFTDVSAHLSSSSLS 148


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 593 NSTAIQEIFKRISEQFTAMFRRRAFLHWYTGEGMDE 486
           NS+ IQ + K I+   T  +R    ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 188 FNSSLSPPYPTRWGRYSEFFS 126
           FNSSL+P  PT + R + FFS
Sbjct: 220 FNSSLTPSQPTTYNR-ANFFS 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,950
Number of Sequences: 5004
Number of extensions: 43716
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)