Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_B08
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    31   0.20 
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.3  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    26   5.6  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   7.4  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   9.8  

>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +2

Query: 56  DGEWLPVAHGLQQCQGQNQAAAFXVMAKNKKVYC**PHSNWRLLMVTRYCSFLI*QKKNV 235
           D + LP++  LQ  QG   A     + ++ ++    P+  W ++M T   S L    + +
Sbjct: 87  DSDVLPLSVALQYGQGSGAALLSQFLKEHTRIIHNPPYEGWNIIMTTGNTSCLDIALRML 146

Query: 236 TNSQISFSSHKYT 274
           TN   S    KY+
Sbjct: 147 TNRGDSILVEKYS 159


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 568 TKIKCRGENSKREGSY--PERHVESSPKPKPGKP 663
           T +K  G N+  +GS+  P+ +V+S+    P +P
Sbjct: 380 TDVKSEGSNNHEQGSFNEPKSNVDSNDSASPKRP 413


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = -2

Query: 803 ISEQHAFXAAHQQREXIPLYGEEPKQXTPETSAPPPAGQRTEPESTSGFPGFGFGED 633
           I++ H   +  +QR+    YGEE     P      P G   E     GFPG GFG D
Sbjct: 52  INKAHEVLSDPEQRKIYDAYGEEGLNGQPGG----PGGGPGE-----GFPGGGFGFD 99


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 749 LYGEEPKQXTPETSAPPPAGQRTEPESTSGFPGFGFGEDSTCRS 618
           L+G+ P      ++APP +   T P + SG  GF FG+ ++  S
Sbjct: 172 LFGK-PAATGTTSNAPPASSTSTTPATGSG--GFSFGKPASLGS 212


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -2

Query: 746 YGEEPKQXTPET---SAPPPAGQRTEPESTSGFP 654
           Y  +P+  TP     S PPP+GQ   P S +  P
Sbjct: 629 YSFQPRPATPSNPPRSLPPPSGQVNAPMSQTPNP 662


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,439
Number of Sequences: 5004
Number of extensions: 63398
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)