Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_B05
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    30   0.51 
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    27   2.7  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   4.7  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    26   8.2  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    26   8.2  

>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 395 LHARTLRTPRYLMSWHSLINHNSLQLI 475
           LH  +L T RY MSW   + H +L+ I
Sbjct: 161 LHVGSLLTTRYAMSWEQSVYHEALEWI 187


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 182 QNIK*LHTSILSVIPIYTDISTKQRTHIYLHTTCPYESVK 301
           +N+K    S L++  I+   + +  TH +L+  CP E +K
Sbjct: 537 KNLKSFLNSCLTIDTIFRATAAELLTHSFLNQACPTEDLK 576


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 222 SPSTRTSVQNNGHIFTYTQHVPTNR*NSSQTHAQC 326
           SP   TS  NN   +T TQ++ TN  N +    +C
Sbjct: 293 SPYYLTSFDNNVRSYTPTQYLGTNYSNGTAVDGKC 327


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 296 PIRRDMLCVSKYVSVVLY*CPCRWGL 219
           P+ +  +C+   +SVV+  CPC  GL
Sbjct: 466 PMGKFAVCLKLTISVVVVACPCALGL 491


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 435 DIKYLGVRSVRAWRILFLKPLVAQSSTIP 349
           D+K  GV   RA R+L L  +V   +T+P
Sbjct: 347 DVKSKGVDGARAERVLELINIVTNKNTVP 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,400
Number of Sequences: 5004
Number of extensions: 43004
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)