Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_B02
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 214 5e-56
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 214 5e-56
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 214 5e-56
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 64 8e-11
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AF025463-1|AAB71008.3| 871|Caenorhabditis elegans Hypothetical ... 30 2.2
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 3.9
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 6.8
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 6.8
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 6.8
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 214 bits (523), Expect = 5e-56
Identities = 106/163 (65%), Positives = 119/163 (73%), Gaps = 1/163 (0%)
Frame = -2
Query: 799 PRXIXTEVKSVEMHHEALQEAVPGDNVGFXXXXXXXXXXXXXXCW*LQKX-PT*GAADFT 623
P+ + TEVKSVEMHHE+L EAVPGDNVGF K P A F
Sbjct: 248 PQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFH 307
Query: 622 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 443
AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA I
Sbjct: 308 AQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGI 367
Query: 442 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVXQGCQLS 314
V L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGV + + S
Sbjct: 368 VELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKS 410
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 214 bits (523), Expect = 5e-56
Identities = 106/163 (65%), Positives = 119/163 (73%), Gaps = 1/163 (0%)
Frame = -2
Query: 799 PRXIXTEVKSVEMHHEALQEAVPGDNVGFXXXXXXXXXXXXXXCW*LQKX-PT*GAADFT 623
P+ + TEVKSVEMHHE+L EAVPGDNVGF K P A F
Sbjct: 282 PQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFH 341
Query: 622 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 443
AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA I
Sbjct: 342 AQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGI 401
Query: 442 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVXQGCQLS 314
V L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGV + + S
Sbjct: 402 VELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKS 444
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 214 bits (523), Expect = 5e-56
Identities = 106/163 (65%), Positives = 119/163 (73%), Gaps = 1/163 (0%)
Frame = -2
Query: 799 PRXIXTEVKSVEMHHEALQEAVPGDNVGFXXXXXXXXXXXXXXCW*LQKX-PT*GAADFT 623
P+ + TEVKSVEMHHE+L EAVPGDNVGF K P A F
Sbjct: 282 PQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFH 341
Query: 622 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 443
AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA I
Sbjct: 342 AQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGI 401
Query: 442 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVXQGCQLS 314
V L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGV + + S
Sbjct: 402 VELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKS 444
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 64.5 bits (150), Expect = 8e-11
Identities = 33/97 (34%), Positives = 55/97 (56%)
Frame = -2
Query: 628 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 449
F A+V+VL H I++GY+ VL +A + +D++TG+ K +K +
Sbjct: 431 FDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKTGEKKRA--KFVKQDEK 488
Query: 448 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG 338
I+ L +P +E F+E+P LGRF +RD +T+A+G
Sbjct: 489 CIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIG 525
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/100 (22%), Positives = 43/100 (43%)
Frame = -2
Query: 628 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 449
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 487 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 546
Query: 448 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVXQ 329
A+V + + +E+F LGR R T+A G+ +
Sbjct: 547 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVE 586
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/100 (22%), Positives = 43/100 (43%)
Frame = -2
Query: 628 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 449
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 505 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 564
Query: 448 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVXQ 329
A+V + + +E+F LGR R T+A G+ +
Sbjct: 565 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVE 604
>AF025463-1|AAB71008.3| 871|Caenorhabditis elegans Hypothetical
protein K10B4.3 protein.
Length = 871
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/81 (25%), Positives = 37/81 (45%)
Frame = +2
Query: 527 CKFAGNVGSVAIQDWCVTV*DLTRMVKHNDLSCKICSTLGGXFLESPATXHDAILDGHVL 706
CK N+G V+ V +L M ++N +I T+ +++ + H L HV
Sbjct: 298 CKIIANIGRVSSPLASEAVDELVLMARNNSSDQQILQTVLNE-IDAIGSIHPTSLRRHVS 356
Query: 707 YVETYIVSRYSFLESFVVHLH 769
+ +T SR +E + HL+
Sbjct: 357 FFQTLPTSR--IIERILAHLN 375
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -1
Query: 179 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 72
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 565 LDCHTAHIACKFAEIKEKVDRRTGKSTE 482
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 565 LDCHTAHIACKFAEIKEKVDRRTGKSTE 482
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 565 LDCHTAHIACKFAEIKEKVDRRTGKSTE 482
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,364,737
Number of Sequences: 27780
Number of extensions: 358424
Number of successful extensions: 926
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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