Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_A24
(861 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 82 6e-16
Z69661-4|CAA93491.1| 238|Caenorhabditis elegans Hypothetical pr... 34 0.15
Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 30 1.8
U21320-7|AAA62533.1| 558|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr... 28 9.8
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 81.8 bits (193), Expect = 6e-16
Identities = 36/82 (43%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Frame = -2
Query: 617 PGGHXGRFVIWTQSAFGRLDPLFGSWKTPSKQ-KKNFNLPQPKMANTDLTRLLKSDEIRK 441
PGGH GR +IWT+SAF +LD ++G+ S Q KK +++P P MAN+D +R+++S+E+ K
Sbjct: 241 PGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVK 300
Query: 440 VLRAPNKRVIRATRKLNPLTNK 375
+RAP K + NPL +
Sbjct: 301 AIRAPKKNPVLPKVHRNPLKKR 322
>Z69661-4|CAA93491.1| 238|Caenorhabditis elegans Hypothetical
protein F48F7.6 protein.
Length = 238
Score = 33.9 bits (74), Expect = 0.15
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = -2
Query: 527 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRA--PNKRVIRATRKLNPLTNKQGDAETQ 354
K+ KN LPQ K + L L+ + I ++ A NK++I + NK+ E +
Sbjct: 36 KKTKNMTLPQKKAESAFLMICLQRNTIELMVTALLANKKIIDSKGNCAFCRNKKQHEEEK 95
Query: 353 SLRGRAEEESYLRAAQKEELE 291
GR + + +L K+EL+
Sbjct: 96 WCAGRTKLQLFLHRIDKDELK 116
>Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/85 (18%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = -2
Query: 536 TPSKQKKNFNLPQPKMA---NTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNKQGD 366
TP + + + P P+ ++D ++ + + R+V +V ++ P+ ++ +
Sbjct: 167 TPIQDGEEIDAPAPESTEEESSDARQVSRQQKDRRVSSTTRGKVGKSGTSRRPMKQRERE 226
Query: 365 AETQSLRGRAEEESYLRAAQKEELE 291
+G EE+ +R AQK +++
Sbjct: 227 DTVDESKGEEEEDQGVRPAQKRQVK 251
>Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/85 (18%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = -2
Query: 536 TPSKQKKNFNLPQPKMA---NTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNKQGD 366
TP + + + P P+ ++D ++ + + R+V +V ++ P+ ++ +
Sbjct: 167 TPIQDGEEIDAPAPESTEEESSDARQVSRQQKDRRVSSTTRGKVGKSGTSRRPMKQRERE 226
Query: 365 AETQSLRGRAEEESYLRAAQKEELE 291
+G EE+ +R AQK +++
Sbjct: 227 DTVDESKGEEEEDQGVRPAQKRQVK 251
>U21320-7|AAA62533.1| 558|Caenorhabditis elegans Hypothetical
protein K04G7.1 protein.
Length = 558
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 385 SLTNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERR 206
S ++ + K+N +K LE+R + + + D E SG +LS P A L++RR
Sbjct: 352 STSSASPQKMNHEQQRYSQKRHLEMRTGRTTRDMRDYESSGRQLSP-TPTTTAGLLKKRR 410
Query: 205 RK 200
R+
Sbjct: 411 RE 412
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = -2
Query: 602 GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 423
G F+ T G F +TP + +N P+ A +++ +IR +L P
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848
Query: 422 KRVI 411
K +
Sbjct: 2849 KEFV 2852
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = -2
Query: 602 GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 423
G F+ T G F +TP + +N P+ A +++ +IR +L P
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848
Query: 422 KRVI 411
K +
Sbjct: 2849 KEFV 2852
>Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical
protein F10F2.2 protein.
Length = 1343
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = -2
Query: 464 LKSDEIRKVLRAPNKRVIRATRKLNPLTNKQGDAETQSLRGRAEEESYLRAAQKEELE 291
+ DE+RK AP+++V++ + + G A + S++G E + A Q+ + E
Sbjct: 425 IDKDEVRKEPCAPHQKVVKIGGPVYRIGVGGGAASSVSVQGNRENQLDFAAVQRGDAE 482
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,921,604
Number of Sequences: 27780
Number of extensions: 204425
Number of successful extensions: 656
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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