Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_A23
(1019 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 157 3e-39
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 72 2e-13
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 71 3e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 68 2e-12
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 54 3e-08
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 43 8e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 42 2e-04
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 41 3e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 37 0.005
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 2.4
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 9.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 157 bits (380), Expect = 3e-39
Identities = 71/77 (92%), Positives = 75/77 (97%)
Frame = -1
Query: 497 MSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 318
MSGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWIS
Sbjct: 299 MSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWIS 358
Query: 317 KQEYDESGPSIVHRKCF 267
KQEYDESGP IV+RKCF
Sbjct: 359 KQEYDESGPGIVYRKCF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 71.7 bits (168), Expect = 2e-13
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 6/80 (7%)
Frame = -1
Query: 491 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWI 321
GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WI
Sbjct: 354 GGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWI 412
Query: 320 SKQEYDESGP---SIVHRKC 270
S+QEY+E G +++ ++C
Sbjct: 413 SRQEYEEHGSDRLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 70.5 bits (165), Expect = 3e-13
Identities = 31/77 (40%), Positives = 54/77 (70%)
Frame = -1
Query: 497 MSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 318
+SGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+
Sbjct: 304 LSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLIT 363
Query: 317 KQEYDESGPSIVHRKCF 267
+EY ++ +++ R+ F
Sbjct: 364 SEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 68.1 bits (159), Expect = 2e-12
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Frame = -1
Query: 497 MSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQQMW 324
++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL FQ +W
Sbjct: 349 VTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLW 408
Query: 323 ISKQEYDESG 294
+SKQEYDE G
Sbjct: 409 VSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 54.0 bits (124), Expect = 3e-08
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 12/80 (15%)
Frame = -1
Query: 497 MSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILA 351
+SGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA
Sbjct: 299 LSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLA 358
Query: 350 S-LSTFQQMWISKQEYDESG 294
++ MW+SK E++E G
Sbjct: 359 DIMAQNDHMWVSKAEWEEYG 378
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 42.7 bits (96), Expect = 8e-05
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = -1
Query: 491 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 312
GG +PG R+ E+ +LAP+ ++K+ P + W S + L + I++
Sbjct: 327 GGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRS 385
Query: 311 EYDESGPSIVHRK 273
EY E G +I+ RK
Sbjct: 386 EYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 41.5 bits (93), Expect = 2e-04
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = -1
Query: 497 MSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 318
++GG PG+ R+++E+T++ P I + W G S + F+ ++
Sbjct: 640 ITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVT 699
Query: 317 KQEYDESGPSIV 282
++EY E GP +
Sbjct: 700 REEYLEKGPEYI 711
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 40.7 bits (91), Expect = 3e-04
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Frame = -1
Query: 497 MSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKYSVWIGGS 360
+SGG+T++ +R+Q+++ + + + +I+ ++ +VW GGS
Sbjct: 332 LSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGS 391
Query: 359 ILASLSTFQQMWISKQEYDESGPSIVHR 276
+LA F +K +Y+E G SI R
Sbjct: 392 LLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 36.7 bits (81), Expect = 0.005
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 491 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWI 321
GG +PG A +++ I + + I +I PP + ++ W G I + ++WI
Sbjct: 537 GGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWI 596
Query: 320 SKQEYDESGPSIVHRK 273
++ G ++ K
Sbjct: 597 KNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 374 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 273
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 449 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 339
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,451
Number of Sequences: 5004
Number of extensions: 43045
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 531251476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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