Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_A22
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    28   1.4  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    27   2.4  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    27   2.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   4.2  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   4.2  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    27   4.2  
SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   5.5  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   7.3  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    25   9.6  

>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 670 SPLASRGNNTETNARRSGLRRSHISTRFT 756
           S LAS+GNN  T A R G + S +  R T
Sbjct: 2   SSLASQGNNASTPAYRYGFQTSEVGDRPT 30


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +2

Query: 575 SPVPLNTRWAVSSSTQRHSNECTVNAVVTETGRHSPVEATTPR-RTHVALGSAXPIYQHD 751
           +PV + +     ++T +  +E + N   + T +  P  A+TP+ R+H +   A P+   D
Sbjct: 118 TPVKIESPHVSQNNTFQSYSELSPNVETSLTMKTPPAHASTPKFRSHKSHRVAVPMSFMD 177

Query: 752 SPDIPTS 772
           S  + TS
Sbjct: 178 SSALHTS 184


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 259 WTVGLPSNYTRLVEDLLIVRYGMLP 333
           W  G P  YT LV +LL +RY +LP
Sbjct: 669 WLYGEP--YTSLVRELLRIRYRLLP 691


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 168 ILDRCLNLVYDSYEILKISLHIYTSYEQ*HLDSRSTEQLHTL 293
           ++D CL    D Y I  I+ HI  +++    D RS E  H L
Sbjct: 792 LIDVCLKN-RDRYNIFDIAFHINAAFDFVKGDKRSVEYCHYL 832


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 261 DSRSTEQLHTLGGRSSHCPVWHAALFETESQNPGMAAS 374
           DSR  E++  L  +S+H    H +L++TE +NP  A S
Sbjct: 168 DSRIQEKIR-LFIQSAHNIAKHPSLYDTEVRNPSAAES 204


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 259 WTVGLPSNYTRLVEDLLIVRYGMLPYLKQNRRIPGWQRLLSAA 387
           W   + S +T L  DLLI++Y  L YL    + P W   L+A+
Sbjct: 104 WFSTIVSTFT-LAVDLLIIKYDGLSYLWNITKFP-WMDKLAAS 144


>SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 717 LWAPPXPYINTIHPT 761
           LWAPP P + ++H T
Sbjct: 99  LWAPPEPVLRSVHNT 113


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 726 PPXPYINTIHPTYRPAALRV 785
           PP P  N+I P Y PA  R+
Sbjct: 60  PPFPLFNSISPVYDPATGRL 79


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 575 SPVPLNTRWAVSSSTQRHSNECTVNAVVTETGRH 676
           SP+P +  W  S   + HS+ C V    + TG H
Sbjct: 208 SPIPGHGFWIESFDNKSHSSTCAV--ATSGTGEH 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,249,367
Number of Sequences: 5004
Number of extensions: 69806
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)