Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_A21
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.36
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.3
03_05_0183 - 21681673-21682524 29 4.4
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 29 5.8
07_03_1086 + 23858419-23859423,23859527-23859610 29 5.8
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 29 5.8
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 29 5.8
07_03_0414 + 17892133-17893590 28 7.7
01_06_0695 - 31292622-31293317 28 7.7
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 85 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 213
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 440 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 342
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 652 SQAFIATLLFDPSMSALPIIAKQNSPS 572
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = +1
Query: 22 SSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKT 201
S +SPG L R HD +L KSST + R E SR +KT
Sbjct: 731 SEADSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKT 787
Query: 202 DSID 213
+S++
Sbjct: 788 ESVE 791
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -1
Query: 500 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 336
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 335 GEDMLTVEPRESGGSK 288
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 28.7 bits (61), Expect = 5.8
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Frame = +1
Query: 16 LSSSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKK 195
L +DESP A S R PS RQ++++ D R + E P V K
Sbjct: 492 LGRADESPSAPPSPTRKLSKVKTPSQQDRQQKEAKED----RQQKEPNPTGTPSKIAVSK 547
Query: 196 KTDSIDLRDPNGL----RRRVSRFECETRLVKSHCLEPP 300
+ PN VSR E ET+ K + + P
Sbjct: 548 LEGETTQKKPNPTGTPSEMAVSRLEGETKQKKPNPIGMP 586
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +1
Query: 193 KKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISSPDSARLASALEAF 372
KKT ++ + P+ R + + + +V S C D G+ ++ + R+ASA++AF
Sbjct: 566 KKTMAVVIASPSAGGRPRAFLKGASEVVLSRCSLVLDGTGNVEKLTDAKAKRVASAIDAF 625
>07_03_0414 + 17892133-17893590
Length = 485
Score = 28.3 bits (60), Expect = 7.7
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +3
Query: 432 QMSETAVPLVLSSITIATTSHQ*GKTNLSHDGLIPAHVPF*WVNNPTL-GEFCFAMIGRA 608
Q + V + L S+T+ + T H GL+ A PF WV P + G A + A
Sbjct: 279 QADGSVVYVSLGSLTVISLEQF---TEFLH-GLVAAGYPFLWVLRPDMVGASQSAALREA 334
Query: 609 DIEGSKSNVAMNAWLPQ 659
KS + W PQ
Sbjct: 335 VAAAGKSKARVVEWAPQ 351
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +1
Query: 37 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 171
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,045,155
Number of Sequences: 37544
Number of extensions: 507842
Number of successful extensions: 1503
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1502
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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