Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_A19
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    75   9e-15
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   5.2  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    26   6.9  

>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 75.4 bits (177), Expect = 9e-15
 Identities = 59/169 (34%), Positives = 83/169 (49%), Gaps = 16/169 (9%)
 Frame = -2

Query: 577 MMDCEQIERXS-AFSLELRVPFLDIXFTHHYLSIPPKLRQPQNG-VEKHLLRSSFAK--- 413
           + DC +  + + A+ LE RVPFLD  F    L+I P+ +   NG  EK++LR +F     
Sbjct: 390 LSDCLRANKSTMAWGLEARVPFLDKDFLEVALNIDPEEKMYINGRKEKYILRKAFDTTHD 449

Query: 412 SGL---LPDCVLWRHKEAFSDGXXXXXXXXXXXXKEITTERLXEDDIXYPGLQ-----PK 257
           S L   LP  +LWR KE FSDG             E+    + +D+   P  +     P 
Sbjct: 450 SSLQPYLPQDILWRQKEQFSDGVGYSWIDALKDTAELC---ISDDEFALPRREWGDDIPT 506

Query: 256 TNESXYYRYVFEKSFPGQHNFTPYYWMPK--WVQVSDPSARF-IKHYAA 119
           T E+ +YR +F++ FP Q   T   W+PK  W    DPS R+   H AA
Sbjct: 507 TKEAFWYRKLFDEIFPRQCADTVMRWVPKAEWGCPEDPSGRYQAGHVAA 555


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = -3

Query: 273 QDCSRKRMNPNITATYLRNHFQDNIILLRTIGCXNGF 163
           ++C +K   P++   +LR H  +   +    GC   F
Sbjct: 28  EECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAF 64


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 238 YRYVFEKSFPGQHNFTPYYWMPK 170
           YR  FE+ F G  N   Y W PK
Sbjct: 349 YRPDFEQCFTGDMNGNIYMWSPK 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,502
Number of Sequences: 5004
Number of extensions: 40257
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)