Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_A19
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41034-5|AAA82381.1|  567|Caenorhabditis elegans Hypothetical pr...    87   1e-17
U41034-6|AAU05557.1|  538|Caenorhabditis elegans Hypothetical pr...    85   5e-17
AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl t...    70   2e-12

>U41034-5|AAA82381.1|  567|Caenorhabditis elegans Hypothetical
           protein M02D8.4a protein.
          Length = 567

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
 Frame = -2

Query: 571 DCEQIERXS-AFSLELRVPFLDIXFTHHYLSIPPKLRQPQ-----NGVEKHLLRSSF--A 416
           DC + ++ S A S+E+RVPFLD  F    +S+ P  ++PQ        EK +LRS+F   
Sbjct: 378 DCLRADKSSMAHSVEVRVPFLDKAFVEAAVSLDPAFKRPQKLEDGRNCEKFVLRSAFNTD 437

Query: 415 KSGLLPDCVLWRHKEAFSD--GXXXXXXXXXXXXKEITTERLXEDDIXYPGLQPKTNESX 242
           +   LPD +LWR KE FSD  G             +IT +   +    +P   P + E+ 
Sbjct: 438 QYPYLPDEILWRQKEQFSDGVGYSWIDTLMKYCAAKITDKEFSQASKLFPHNTPHSKEAF 497

Query: 241 YYRYVFEKSFPG-QHNFTPYYWMPKWVQVSDPSAR 140
           Y R +F + FP  Q   T   W+PKW +  DPS R
Sbjct: 498 YMRKIFHEQFPSEQAALTVRKWIPKWQKNQDPSGR 532


>U41034-6|AAU05557.1|  538|Caenorhabditis elegans Hypothetical
           protein M02D8.4c protein.
          Length = 538

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 54/153 (35%), Positives = 77/153 (50%), Gaps = 11/153 (7%)
 Frame = -2

Query: 571 DCEQIERXS-AFSLELRVPFLDIXFTHHYLSIPPKLRQPQ-----NGVEKHLLRSSF--A 416
           DC + ++ S A S+E+RVPFLD  F    +S+ P  ++PQ        EK +LRS+F   
Sbjct: 378 DCLRADKSSMAHSVEVRVPFLDKAFVEAAVSLDPAFKRPQKLEDGRNCEKFVLRSAFNTD 437

Query: 415 KSGLLPDCVLWRHKEAFSD--GXXXXXXXXXXXXKEITTERLXEDDIXYPGLQPKTNESX 242
           +   LPD +LWR KE FSD  G             +IT +   +    +P   P + E+ 
Sbjct: 438 QYPYLPDEILWRQKEQFSDGVGYSWIDTLMKYCAAKITDKEFSQASKLFPHNTPHSKEAF 497

Query: 241 YYRYVFEKSFPG-QHNFTPYYWMPKWVQVSDPS 146
           Y R +F + FP  Q   T   W+PKW +  DPS
Sbjct: 498 YMRKIFHEQFPSEQAALTVRKWIPKWQKNQDPS 530


>AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl trna
           synthetase protein2 protein.
          Length = 551

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
 Frame = -2

Query: 547 SAFSLELRVPFLDIXFTHHYLSIPPKLRQPQNGVEKHLLRSSFAKSGLLPDCVLWRHKEA 368
           S   LE+RVPFLD  F      +PP  +     +EKH+LRS+F   G LPD VLWR KE 
Sbjct: 383 SCHGLEIRVPFLDKRFIDLVSRLPPSYKLMPMKLEKHVLRSAF--EGWLPDEVLWRSKEG 440

Query: 367 FSD--GXXXXXXXXXXXXKEITTERLXEDDI-XYPGLQPKTNESXYYRYVFEKSF 212
           F++  G             ++ ++ L E     +P   P+T E  +YR +FE +F
Sbjct: 441 FAEALGKTDLGDILAEHCDKLISKSLYERRAERFPDRTPETTEEYWYRQIFEDTF 495



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 659 YIYFXRRPV*KXTXHKESVRXXXDXYXYDGLRADRTXEC 543
           Y Y  R P      HKE +R     + YD LR DR+  C
Sbjct: 347 YAYMQRAPN-ALHLHKEILRRMHHLHQYDVLRCDRSTSC 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,661,580
Number of Sequences: 27780
Number of extensions: 226509
Number of successful extensions: 485
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)