Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_A17
         (851 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    33   0.20 
AF016425-12|AAB65336.1|  190|Caenorhabditis elegans Histone h1 l...    31   0.79 
Z70754-8|CAE17845.1|  188|Caenorhabditis elegans Hypothetical pr...    28   9.7  

>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
 Frame = +1

Query: 235  DGRAPPGAATEAPPLNTARLHSPL*LKLNDYIQT*LLLVLFNKNEQNIVLLR----YGSA 402
            DG     + T+   L+T   H P+   +N Y    +LL+L N  +  I+ L      G  
Sbjct: 1440 DGWVETWSTTKGRLLSTFNAHRPIKKLINSYESHRMLLLLENCAQLPILCLHNTPAVGVE 1499

Query: 403  NSLLQAATARHIASNLKDIISEGINDAIRRDDILHSTTLLYKQSPPRCLLP 555
             +  ++A A+ ++S   + ++      I++D IL S      QS PR   P
Sbjct: 1500 ATRRRSARAQSVSSASNEPVASTSAGEIKKDPILSSNNGGNAQSAPRATAP 1550


>AF016425-12|AAB65336.1|  190|Caenorhabditis elegans Histone h1 like
           protein 6 protein.
          Length = 190

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 22/78 (28%), Positives = 37/78 (47%)
 Frame = +1

Query: 241 RAPPGAATEAPPLNTARLHSPL*LKLNDYIQT*LLLVLFNKNEQNIVLLRYGSANSLLQA 420
           +AP   AT+ P + TA  H P    +N  +   +  +   K    I +L+Y +AN  L  
Sbjct: 17  KAPKANATKVPKVKTAAAHPPF---IN-MVTAAISSLKERKGSSKIAILKYITANYKL-G 71

Query: 421 ATARHIASNLKDIISEGI 474
              + I SNL+  + +G+
Sbjct: 72  DQVKKINSNLRSALKKGV 89


>Z70754-8|CAE17845.1|  188|Caenorhabditis elegans Hypothetical
           protein F58E6.11 protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 397 SANSLLQAATARHIASNLKDIISEGINDAIRRDDILHSTTLL 522
           SA SLL +     ++ + ++ I+E + DAI+    L STT L
Sbjct: 134 SAFSLLSSVQVHSLSFSNREKIAEDLEDAIKMQPYLGSTTTL 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,666,756
Number of Sequences: 27780
Number of extensions: 226664
Number of successful extensions: 424
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)