Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_A16
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459           34   0.12 
05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069     31   0.83 
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527...    31   1.4  
05_03_0039 - 7621613-7622695                                           29   3.3  
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535...    29   5.8  
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054...    28   7.7  

>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
          Length = 341

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
 Frame = -2

Query: 653 LPPLKYTLTAQCPSMSRS---QFRTPSRYQCPPLTPSR--STSRTQ*KRPCRSQLTSPST 489
           +PP   T+ A  P+  RS   + R  +    PPL P +  + +    KRP  S  ++ S 
Sbjct: 1   MPP---TMLASVPTRPRSHPFRRRRGAAAAAPPLLPDQIAAAAAAAAKRPAESSTSASSC 57

Query: 488 GHTQ--STSRSTCLCTLRSPYRTQLRYRYQ 405
            H++  S + +TC  +L +  R + R RYQ
Sbjct: 58  FHSEVISATSTTCPTSLAAAQRPEKRPRYQ 87


>05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069
          Length = 228

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 21/68 (30%), Positives = 24/68 (35%)
 Frame = +2

Query: 452 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYGMCFSXXXXXXXXXXXXXXXXFSTWTGTGRS 631
           +GTC    T  G+ TGM TG  T   TG G   +                  T TG G  
Sbjct: 99  SGTCKYPATASGVGTGMGTGTSTGTGTGVGTGGTGTGGAGVGAGTGTGVGTGTGTGAGMG 158

Query: 632 TCTLTGVG 655
           T    G G
Sbjct: 159 TGAGAGTG 166


>04_03_0747 -
           19251617-19251781,19252377-19252502,19252606-19252716,
           19252931-19253679,19254034-19254167,19254595-19254740,
           19255166-19255336,19255977-19256828
          Length = 817

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 738 DXPYPVHXPKPVXTPSRSPSHTPVENQXPTPVK 640
           D P  +  P P   P+R+P  TP     PTP +
Sbjct: 121 DAPEHISPPPPPPPPARTPMPTPTPTPTPTPTR 153


>05_03_0039 - 7621613-7622695
          Length = 360

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 589 PRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 473
           P+ G    P P  + HP P  + +  P  HP  +  P P
Sbjct: 162 PKPGPKPEPKPEPKPHPEPKPEPKPKPVPHPEPKPEPKP 200



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 592 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 473
           VP       P P  + HP P  + +  P  HP+ +  P P
Sbjct: 189 VPHPEPKPEPKPEPKPHPEPKPEPKPEPKLHPKPEPKPHP 228


>06_03_0310 -
           19453047-19453160,19453240-19453338,19453441-19453513,
           19453598-19453708,19453795-19453956,19454064-19454340,
           19454542-19455160,19455256-19455471
          Length = 556

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 732 PYPVHXPKPVXTPSRSPSHTPVENQXPTPVK 640
           P P     P  TP R+P+ TP +   P P K
Sbjct: 179 PAPTPPQAPAPTPPRAPTPTPPQAPLPAPSK 209


>05_04_0028 +
           17302359-17302445,17303887-17303952,17305415-17305489,
           17305638-17305737,17305819-17305865,17305937-17305994,
           17306161-17306210,17306417-17306473,17306561-17306703,
           17306793-17306834,17307083-17307124,17308239-17308272,
           17308342-17308443,17310373-17310652,17311202-17311332,
           17311676-17311773,17312525-17312717
          Length = 534

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -2

Query: 647 PLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTS 468
           P+K    +   S S  + R+PSR   P  +P R  S +  K P +S+  S S    +  +
Sbjct: 238 PVKERSRSASQSRSPVKERSPSRSPPPATSPPREKSAS--KSPVKSRSLSRSPSPVRDIN 295

Query: 467 RSTCLCTLR 441
           +  C+  L+
Sbjct: 296 QKLCIFRLQ 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,534,924
Number of Sequences: 37544
Number of extensions: 283873
Number of successful extensions: 1725
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)