Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_A16
(816 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 34 0.71
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 34 0.71
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 34 0.71
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 34 0.71
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 34 0.71
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 34 0.71
AK124971-1|BAC86011.1| 172|Homo sapiens protein ( Homo sapiens ... 32 2.2
X74370-1|CAA52408.1| 543|Homo sapiens mucin protein. 31 3.8
AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein. 31 3.8
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro... 31 3.8
Z82208-1|CAI42768.1| 1711|Homo sapiens BCL6 co-repressor-like 1 ... 27 4.5
AL136450-3|CAI42884.1| 1711|Homo sapiens BCL6 co-repressor-like ... 27 4.5
AK074089-1|BAB84915.1| 1696|Homo sapiens FLJ00160 protein protein. 27 4.5
AK223352-1|BAD97072.1| 507|Homo sapiens nucleoporin 54kDa varia... 31 5.0
AK222752-1|BAD96472.1| 508|Homo sapiens nucleoporin 54kDa varia... 31 5.0
AK001517-1|BAA91735.1| 484|Homo sapiens protein ( Homo sapiens ... 31 5.0
AF157322-1|AAF67488.1| 505|Homo sapiens nucleoporin p54 protein... 31 5.0
AC005005-2|AAD15618.1| 1056|Homo sapiens WUGSC:H_DJ412A9.2 protein. 31 6.6
Y13472-1|CAA73875.1| 1379|Homo sapiens FIM protein protein. 30 8.7
Y09445-1|CAA70592.1| 513|Homo sapiens TBX5 protein. 30 8.7
X58521-1|CAA41411.1| 522|Homo sapiens nucleoporin p62 protein. 30 8.7
L14076-1|AAA36649.1| 494|Homo sapiens pre-mRNA splicing factor ... 30 8.7
CR541721-1|CAG46522.1| 522|Homo sapiens NUP62 protein. 30 8.7
BT007415-1|AAP36083.1| 494|Homo sapiens splicing factor, argini... 30 8.7
BC105977-1|AAI05978.1| 837|Homo sapiens GCN5 general control of... 30 8.7
BC101107-1|AAI01108.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.7
BC101106-1|AAI01107.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.7
BC101105-1|AAI01106.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.7
BC101104-1|AAI01105.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.7
BC095410-1|AAH95410.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.7
BC050717-1|AAH50717.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.7
BC039907-1|AAH39907.1| 837|Homo sapiens GCN5 general control of... 30 8.7
BC036372-1|AAH36372.1| 1377|Homo sapiens zinc finger, MYM-type 2... 30 8.7
BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetit... 30 8.7
BC032743-1|AAH32743.1| 837|Homo sapiens GCN5 general control of... 30 8.7
BC014842-1|AAH14842.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.7
BC003663-1|AAH03663.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.7
BC002781-1|AAH02781.1| 494|Homo sapiens splicing factor, argini... 30 8.7
AL590729-1|CAI14326.1| 494|Homo sapiens splicing factor, argini... 30 8.7
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 30 8.7
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 30 8.7
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 30 8.7
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 30 8.7
AL357500-1|CAH71635.1| 494|Homo sapiens splicing factor, argini... 30 8.7
AL138688-3|CAH71823.1| 755|Homo sapiens zinc finger, MYM-type 2... 30 8.7
AL138688-1|CAH71822.1| 1375|Homo sapiens zinc finger, MYM-type 2... 30 8.7
AL137119-3|CAH70135.1| 755|Homo sapiens zinc finger, MYM-type 2... 30 8.7
AL137119-1|CAH70133.1| 1375|Homo sapiens zinc finger, MYM-type 2... 30 8.7
AJ224901-1|CAA12204.1| 1377|Homo sapiens ZNF198 protein protein. 30 8.7
AJ007676-1|CAA07604.1| 1377|Homo sapiens ZNF198 protein protein. 30 8.7
AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear... 30 8.7
AF060181-1|AAC23591.1| 1113|Homo sapiens zinc finger protein pro... 30 8.7
AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear... 30 8.7
AF035374-1|AAB88464.1| 699|Homo sapiens Cys-rich protein protein. 30 8.7
AF029777-1|AAC39769.1| 837|Homo sapiens hGCN5 protein. 30 8.7
AF012126-1|AAC01561.1| 757|Homo sapiens zinc finger protein pro... 30 8.7
AB209856-1|BAD93093.1| 419|Homo sapiens splicing factor, argini... 30 8.7
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 33.9 bits (74), Expect = 0.71
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = -2
Query: 626 AQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCT 447
++ P+ RS+ RTP+R + TP+R R++ + P R + + S +S SRS +
Sbjct: 586 SRTPARRRSRSRTPTRRRSRSRTPAR-RGRSRSRTPARRRSRTRSPVRRRSRSRSPARRS 644
Query: 446 LRSPYRTQLR 417
RS RT R
Sbjct: 645 GRSRSRTPAR 654
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 33.9 bits (74), Expect = 0.71
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = -2
Query: 626 AQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCT 447
++ P+ RS+ RTP+R + TP+R R++ + P R + + S +S SRS +
Sbjct: 586 SRTPARRRSRSRTPTRRRSRSRTPAR-RGRSRSRTPARRRSRTRSPVRRRSRSRSPARRS 644
Query: 446 LRSPYRTQLR 417
RS RT R
Sbjct: 645 GRSRSRTPAR 654
Score = 31.5 bits (68), Expect = 3.8
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Frame = -2
Query: 605 RSQFRTP-----SRYQCPPLTPSRSTSRTQ--*KRPCRSQLTSPSTGHTQSTSRSTCLCT 447
RS+ RTP SR + PP+T RS SRT +R RS+ TSP T +S SR++ +
Sbjct: 1934 RSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSR-TSPIT-RRRSRSRTSPVTR 1991
Query: 446 LRSPYRT 426
RS RT
Sbjct: 1992 RRSRSRT 1998
Score = 31.1 bits (67), Expect = 5.0
Identities = 22/56 (39%), Positives = 29/56 (51%)
Frame = -2
Query: 593 RTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 426
R SR + PP+T RS SRT R RS+ +P +S SR+ + RS RT
Sbjct: 1920 RRRSRSRTPPVTRRRSRSRTPTTRR-RSRSRTPPVTRRRSRSRTPPVTRRRSRSRT 1974
Score = 31.1 bits (67), Expect = 5.0
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Frame = -2
Query: 605 RSQFRTP------SRYQCPPLTPSRSTSRTQ--*KRPCRSQLTSPSTGHTQSTSRSTCLC 450
RS+ RTP SR + PP+T RS SRT +R RS+ TSP T +S SR++ +
Sbjct: 1945 RSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSR-TSPVT-RRRSRSRTSPVT 2002
Query: 449 TLRSPYRT 426
RS RT
Sbjct: 2003 RRRSRSRT 2010
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 33.9 bits (74), Expect = 0.71
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = -2
Query: 626 AQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCT 447
++ P+ RS+ RTP+R + TP+R R++ + P R + + S +S SRS +
Sbjct: 586 SRTPARRRSRSRTPTRRRSRSRTPAR-RGRSRSRTPARRRSRTRSPVRRRSRSRSPARRS 644
Query: 446 LRSPYRTQLR 417
RS RT R
Sbjct: 645 GRSRSRTPAR 654
Score = 31.5 bits (68), Expect = 3.8
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Frame = -2
Query: 605 RSQFRTP-----SRYQCPPLTPSRSTSRTQ--*KRPCRSQLTSPSTGHTQSTSRSTCLCT 447
RS+ RTP SR + PP+T RS SRT +R RS+ TSP T +S SR++ +
Sbjct: 1934 RSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSR-TSPIT-RRRSRSRTSPVTR 1991
Query: 446 LRSPYRT 426
RS RT
Sbjct: 1992 RRSRSRT 1998
Score = 31.1 bits (67), Expect = 5.0
Identities = 22/56 (39%), Positives = 29/56 (51%)
Frame = -2
Query: 593 RTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 426
R SR + PP+T RS SRT R RS+ +P +S SR+ + RS RT
Sbjct: 1920 RRRSRSRTPPVTRRRSRSRTPTTRR-RSRSRTPPVTRRRSRSRTPPVTRRRSRSRT 1974
Score = 31.1 bits (67), Expect = 5.0
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Frame = -2
Query: 605 RSQFRTP------SRYQCPPLTPSRSTSRTQ--*KRPCRSQLTSPSTGHTQSTSRSTCLC 450
RS+ RTP SR + PP+T RS SRT +R RS+ TSP T +S SR++ +
Sbjct: 1945 RSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSR-TSPVT-RRRSRSRTSPVT 2002
Query: 449 TLRSPYRT 426
RS RT
Sbjct: 2003 RRRSRSRT 2010
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 33.9 bits (74), Expect = 0.71
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = -2
Query: 626 AQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCT 447
++ P+ RS+ RTP+R + TP+R R++ + P R + + S +S SRS +
Sbjct: 551 SRTPARRRSRSRTPTRRRSRSRTPAR-RGRSRSRTPARRRSRTRSPVRRRSRSRSPARRS 609
Query: 446 LRSPYRTQLR 417
RS RT R
Sbjct: 610 GRSRSRTPAR 619
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 33.9 bits (74), Expect = 0.71
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = -2
Query: 626 AQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCT 447
++ P+ RS+ RTP+R + TP+R R++ + P R + + S +S SRS +
Sbjct: 376 SRTPARRRSRSRTPTRRRSRSRTPAR-RGRSRSRTPARRRSRTRSPVRRRSRSRSPARRS 434
Query: 446 LRSPYRTQLR 417
RS RT R
Sbjct: 435 GRSRSRTPAR 444
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 33.9 bits (74), Expect = 0.71
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = -2
Query: 626 AQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCT 447
++ P+ RS+ RTP+R + TP+R R++ + P R + + S +S SRS +
Sbjct: 634 SRTPARRRSRSRTPTRRRSRSRTPAR-RGRSRSRTPARRRSRTRSPVRRRSRSRSPARRS 692
Query: 446 LRSPYRTQLR 417
RS RT R
Sbjct: 693 GRSRSRTPAR 702
Score = 31.5 bits (68), Expect = 3.8
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Frame = -2
Query: 605 RSQFRTP-----SRYQCPPLTPSRSTSRTQ--*KRPCRSQLTSPSTGHTQSTSRSTCLCT 447
RS+ RTP SR + PP+T RS SRT +R RS+ TSP T +S SR++ +
Sbjct: 1982 RSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSR-TSPIT-RRRSRSRTSPVTR 2039
Query: 446 LRSPYRT 426
RS RT
Sbjct: 2040 RRSRSRT 2046
Score = 31.1 bits (67), Expect = 5.0
Identities = 22/56 (39%), Positives = 29/56 (51%)
Frame = -2
Query: 593 RTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 426
R SR + PP+T RS SRT R RS+ +P +S SR+ + RS RT
Sbjct: 1968 RRRSRSRTPPVTRRRSRSRTPTTRR-RSRSRTPPVTRRRSRSRTPPVTRRRSRSRT 2022
Score = 31.1 bits (67), Expect = 5.0
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Frame = -2
Query: 605 RSQFRTP------SRYQCPPLTPSRSTSRTQ--*KRPCRSQLTSPSTGHTQSTSRSTCLC 450
RS+ RTP SR + PP+T RS SRT +R RS+ TSP T +S SR++ +
Sbjct: 1993 RSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSR-TSPVT-RRRSRSRTSPVT 2050
Query: 449 TLRSPYRT 426
RS RT
Sbjct: 2051 RRRSRSRT 2058
>AK124971-1|BAC86011.1| 172|Homo sapiens protein ( Homo sapiens
cDNA FLJ42981 fis, clone BRTHA2007422. ).
Length = 172
Score = 32.3 bits (70), Expect = 2.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 604 EASSVPRQGTSARPLPRREAHPVPSRKGRAVPS*HP 497
EA R G + P PR+ HP+P + +P+ HP
Sbjct: 20 EAPGATRVGPPSTPAPRKVRHPLPPSQAGILPALHP 55
>X74370-1|CAA52408.1| 543|Homo sapiens mucin protein.
Length = 543
Score = 31.5 bits (68), Expect = 3.8
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = -2
Query: 617 PSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRST 459
P S T S Y C PL S +T T P LTSP+T T ++S++T
Sbjct: 28 PGSSTELAPTISHYDCSPLD-STATPSTPGTAPPPKVLTSPATTPTATSSKAT 79
>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
Length = 1791
Score = 31.5 bits (68), Expect = 3.8
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Frame = -2
Query: 605 RSQFRTP-----SRYQCPPLTPSRSTSRTQ--*KRPCRSQLTSPSTGHTQSTSRSTCLCT 447
RS+ RTP SR + PP+T RS SRT +R RS+ TSP T +S SR++ +
Sbjct: 966 RSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSR-TSPIT-RRRSRSRTSPVTR 1023
Query: 446 LRSPYRT 426
RS RT
Sbjct: 1024 RRSRSRT 1030
Score = 31.1 bits (67), Expect = 5.0
Identities = 22/56 (39%), Positives = 29/56 (51%)
Frame = -2
Query: 593 RTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 426
R SR + PP+T RS SRT R RS+ +P +S SR+ + RS RT
Sbjct: 952 RRRSRSRTPPVTRRRSRSRTPTTRR-RSRSRTPPVTRRRSRSRTPPVTRRRSRSRT 1006
Score = 31.1 bits (67), Expect = 5.0
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Frame = -2
Query: 605 RSQFRTP------SRYQCPPLTPSRSTSRTQ--*KRPCRSQLTSPSTGHTQSTSRSTCLC 450
RS+ RTP SR + PP+T RS SRT +R RS+ TSP T +S SR++ +
Sbjct: 977 RSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSR-TSPVT-RRRSRSRTSPVT 1034
Query: 449 TLRSPYRT 426
RS RT
Sbjct: 1035 RRRSRSRT 1042
>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein
protein.
Length = 1275
Score = 31.5 bits (68), Expect = 3.8
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Frame = -2
Query: 605 RSQFRTP-----SRYQCPPLTPSRSTSRTQ--*KRPCRSQLTSPSTGHTQSTSRSTCLCT 447
RS+ RTP SR + PP+T RS SRT +R RS+ TSP T +S SR++ +
Sbjct: 457 RSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSR-TSPIT-RRRSRSRTSPVTR 514
Query: 446 LRSPYRT 426
RS RT
Sbjct: 515 RRSRSRT 521
Score = 31.1 bits (67), Expect = 5.0
Identities = 22/56 (39%), Positives = 29/56 (51%)
Frame = -2
Query: 593 RTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 426
R SR + PP+T RS SRT R RS+ +P +S SR+ + RS RT
Sbjct: 443 RRRSRSRTPPVTRRRSRSRTPTTRR-RSRSRTPPVTRRRSRSRTPPVTRRRSRSRT 497
Score = 31.1 bits (67), Expect = 5.0
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Frame = -2
Query: 605 RSQFRTP------SRYQCPPLTPSRSTSRTQ--*KRPCRSQLTSPSTGHTQSTSRSTCLC 450
RS+ RTP SR + PP+T RS SRT +R RS+ TSP T +S SR++ +
Sbjct: 468 RSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSR-TSPVT-RRRSRSRTSPVT 525
Query: 449 TLRSPYRT 426
RS RT
Sbjct: 526 RRRSRSRT 533
>Z82208-1|CAI42768.1| 1711|Homo sapiens BCL6 co-repressor-like 1
protein.
Length = 1711
Score = 27.5 bits (58), Expect(2) = 4.5
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = -1
Query: 732 PYPVHXPKPVXTPSRSPSHTP--VENQXPTPV 643
P P P P TPS P TP + PTPV
Sbjct: 350 PAPPSVPMPTPTPSSGPPSTPTLIPAFAPTPV 381
Score = 22.2 bits (45), Expect(2) = 4.5
Identities = 9/29 (31%), Positives = 11/29 (37%)
Frame = -1
Query: 540 PYPVEKAVPFPVNIPVDRPYPVHIEKHVP 454
P PV P P+ P P P +P
Sbjct: 378 PTPVPAPTPAPIFTPAPTPMPAATPAAIP 406
>AL136450-3|CAI42884.1| 1711|Homo sapiens BCL6 co-repressor-like 1
protein.
Length = 1711
Score = 27.5 bits (58), Expect(2) = 4.5
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = -1
Query: 732 PYPVHXPKPVXTPSRSPSHTP--VENQXPTPV 643
P P P P TPS P TP + PTPV
Sbjct: 350 PAPPSVPMPTPTPSSGPPSTPTLIPAFAPTPV 381
Score = 22.2 bits (45), Expect(2) = 4.5
Identities = 9/29 (31%), Positives = 11/29 (37%)
Frame = -1
Query: 540 PYPVEKAVPFPVNIPVDRPYPVHIEKHVP 454
P PV P P+ P P P +P
Sbjct: 378 PTPVPAPTPAPIFTPAPTPMPAATPAAIP 406
>AK074089-1|BAB84915.1| 1696|Homo sapiens FLJ00160 protein protein.
Length = 1696
Score = 27.5 bits (58), Expect(2) = 4.5
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = -1
Query: 732 PYPVHXPKPVXTPSRSPSHTP--VENQXPTPV 643
P P P P TPS P TP + PTPV
Sbjct: 335 PAPPSVPMPTPTPSSGPPSTPTLIPAFAPTPV 366
Score = 22.2 bits (45), Expect(2) = 4.5
Identities = 9/29 (31%), Positives = 11/29 (37%)
Frame = -1
Query: 540 PYPVEKAVPFPVNIPVDRPYPVHIEKHVP 454
P PV P P+ P P P +P
Sbjct: 363 PTPVPAPTPAPIFTPAPTPMPAATPAAIP 391
>AK223352-1|BAD97072.1| 507|Homo sapiens nucleoporin 54kDa variant
protein.
Length = 507
Score = 31.1 bits (67), Expect = 5.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 464 FSMWTGYGLSTGMLTGNGTAFSTGYG 541
F TG+G +TG TG GT TG G
Sbjct: 61 FGFGTGFGTTTGTSTGLGTGLGTGLG 86
>AK222752-1|BAD96472.1| 508|Homo sapiens nucleoporin 54kDa variant
protein.
Length = 508
Score = 31.1 bits (67), Expect = 5.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 464 FSMWTGYGLSTGMLTGNGTAFSTGYG 541
F TG+G +TG TG GT TG G
Sbjct: 61 FGFGTGFGTTTGTSTGLGTGLGTGLG 86
>AK001517-1|BAA91735.1| 484|Homo sapiens protein ( Homo sapiens
cDNA FLJ10655 fis, clone NT2RP2005933, weakly similar to
NUCLEOPORIN NUP57. ).
Length = 484
Score = 31.1 bits (67), Expect = 5.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 464 FSMWTGYGLSTGMLTGNGTAFSTGYG 541
F TG+G +TG TG GT TG G
Sbjct: 61 FGFGTGFGTTTGTSTGLGTGLGTGLG 86
>AF157322-1|AAF67488.1| 505|Homo sapiens nucleoporin p54 protein
protein.
Length = 505
Score = 31.1 bits (67), Expect = 5.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 464 FSMWTGYGLSTGMLTGNGTAFSTGYG 541
F TG+G +TG TG GT TG G
Sbjct: 60 FGFGTGFGTTTGTSTGLGTGLGTGLG 85
>AC005005-2|AAD15618.1| 1056|Homo sapiens WUGSC:H_DJ412A9.2 protein.
Length = 1056
Score = 30.7 bits (66), Expect = 6.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 726 PVHXPKPVXTPSRSPSHTP 670
P PKP +PSRSPSH+P
Sbjct: 350 PPPLPKPPRSPSRSPSHSP 368
>Y13472-1|CAA73875.1| 1379|Homo sapiens FIM protein protein.
Length = 1379
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 534 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 439
PV VP PV +PV P P+ + +P IE+
Sbjct: 907 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 938
>Y09445-1|CAA70592.1| 513|Homo sapiens TBX5 protein.
Length = 513
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 440 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGY 538
+S CT T WTGY ST LT +S G+
Sbjct: 404 YSSCTVTTVQPWTGYPTSTSPLTSPRGPWSLGW 436
>X58521-1|CAA41411.1| 522|Homo sapiens nucleoporin p62 protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 440 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 541
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>L14076-1|AAA36649.1| 494|Homo sapiens pre-mRNA splicing factor
protein.
Length = 494
Score = 30.3 bits (65), Expect = 8.7
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 554 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 417
SRS S+++ P S+ S S T+S S+S RSP R++ R
Sbjct: 444 SRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489
>CR541721-1|CAG46522.1| 522|Homo sapiens NUP62 protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 440 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 541
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BT007415-1|AAP36083.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 30.3 bits (65), Expect = 8.7
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 554 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 417
SRS S+++ P S+ S S T+S S+S RSP R++ R
Sbjct: 444 SRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489
>BC105977-1|AAI05978.1| 837|Homo sapiens GCN5 general control of
amino-acid synthesis 5-like 2 (yeast) protein.
Length = 837
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -1
Query: 762 QVPSKGXCDXPYPVHXPKPVXTPSRSPSHTPVENQXPTP 646
Q P+ P P+ P P TP+ +PS PTP
Sbjct: 6 QAPTPAPAAQPRPLQSPAPAPTPTPAPSPASAPIPTPTP 44
>BC101107-1|AAI01108.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 440 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 541
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC101106-1|AAI01107.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 440 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 541
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC101105-1|AAI01106.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 440 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 541
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC101104-1|AAI01105.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 440 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 541
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC095410-1|AAH95410.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 440 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 541
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC050717-1|AAH50717.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 440 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 541
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC039907-1|AAH39907.1| 837|Homo sapiens GCN5 general control of
amino-acid synthesis 5-like 2 (yeast) protein.
Length = 837
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -1
Query: 762 QVPSKGXCDXPYPVHXPKPVXTPSRSPSHTPVENQXPTP 646
Q P+ P P+ P P TP+ +PS PTP
Sbjct: 6 QAPTPAPAAQPRPLQSPAPAPTPTPAPSPASAPIPTPTP 44
>BC036372-1|AAH36372.1| 1377|Homo sapiens zinc finger, MYM-type 2
protein.
Length = 1377
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 534 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 439
PV VP PV +PV P P+ + +P IE+
Sbjct: 905 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 936
>BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.3 bits (65), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 592 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 473
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 600 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 639
>BC032743-1|AAH32743.1| 837|Homo sapiens GCN5 general control of
amino-acid synthesis 5-like 2 (yeast) protein.
Length = 837
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -1
Query: 762 QVPSKGXCDXPYPVHXPKPVXTPSRSPSHTPVENQXPTP 646
Q P+ P P+ P P TP+ +PS PTP
Sbjct: 6 QAPTPAPAAQPRPLQSPAPAPTPTPAPSPASAPIPTPTP 44
>BC014842-1|AAH14842.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 440 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 541
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC003663-1|AAH03663.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 440 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 541
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC002781-1|AAH02781.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 30.3 bits (65), Expect = 8.7
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 554 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 417
SRS S+++ P S+ S S T+S S+S RSP R++ R
Sbjct: 444 SRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489
>AL590729-1|CAI14326.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 30.3 bits (65), Expect = 8.7
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 554 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 417
SRS S+++ P S+ S S T+S S+S RSP R++ R
Sbjct: 444 SRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.3 bits (65), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 592 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 473
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 600 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 639
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 30.3 bits (65), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 592 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 473
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 609 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 648
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.3 bits (65), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 592 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 473
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 600 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 639
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 30.3 bits (65), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 592 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 473
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 609 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 648
>AL357500-1|CAH71635.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 30.3 bits (65), Expect = 8.7
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 554 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 417
SRS S+++ P S+ S S T+S S+S RSP R++ R
Sbjct: 444 SRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489
>AL138688-3|CAH71823.1| 755|Homo sapiens zinc finger, MYM-type 2
protein.
Length = 755
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 534 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 439
PV VP PV +PV P P+ + +P IE+
Sbjct: 283 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 314
>AL138688-1|CAH71822.1| 1375|Homo sapiens zinc finger, MYM-type 2
protein.
Length = 1375
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 534 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 439
PV VP PV +PV P P+ + +P IE+
Sbjct: 903 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 934
>AL137119-3|CAH70135.1| 755|Homo sapiens zinc finger, MYM-type 2
protein.
Length = 755
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 534 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 439
PV VP PV +PV P P+ + +P IE+
Sbjct: 283 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 314
>AL137119-1|CAH70133.1| 1375|Homo sapiens zinc finger, MYM-type 2
protein.
Length = 1375
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 534 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 439
PV VP PV +PV P P+ + +P IE+
Sbjct: 903 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 934
>AJ224901-1|CAA12204.1| 1377|Homo sapiens ZNF198 protein protein.
Length = 1377
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 534 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 439
PV VP PV +PV P P+ + +P IE+
Sbjct: 905 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 936
>AJ007676-1|CAA07604.1| 1377|Homo sapiens ZNF198 protein protein.
Length = 1377
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 534 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 439
PV VP PV +PV P P+ + +P IE+
Sbjct: 905 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 936
>AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 30.3 bits (65), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 592 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 473
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 598 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 637
>AF060181-1|AAC23591.1| 1113|Homo sapiens zinc finger protein
protein.
Length = 1113
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 534 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 439
PV VP PV +PV P P+ + +P IE+
Sbjct: 641 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 672
>AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 30.3 bits (65), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 592 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 473
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 598 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 637
>AF035374-1|AAB88464.1| 699|Homo sapiens Cys-rich protein protein.
Length = 699
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 534 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 439
PV VP PV +PV P P+ + +P IE+
Sbjct: 633 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 664
>AF029777-1|AAC39769.1| 837|Homo sapiens hGCN5 protein.
Length = 837
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -1
Query: 762 QVPSKGXCDXPYPVHXPKPVXTPSRSPSHTPVENQXPTP 646
Q P+ P P+ P P TP+ +PS PTP
Sbjct: 6 QAPTPAPAAQPRPLQSPAPAPTPTPAPSPASAPIPTPTP 44
>AF012126-1|AAC01561.1| 757|Homo sapiens zinc finger protein
protein.
Length = 757
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 534 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 439
PV VP PV +PV P P+ + +P IE+
Sbjct: 285 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 316
>AB209856-1|BAD93093.1| 419|Homo sapiens splicing factor,
arginine/serine-rich 4 variant protein.
Length = 419
Score = 30.3 bits (65), Expect = 8.7
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 554 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 417
SRS S+++ P S+ S S T+S S+S RSP R++ R
Sbjct: 369 SRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 414
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,733,944
Number of Sequences: 237096
Number of extensions: 1439808
Number of successful extensions: 6212
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 4597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5993
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10147868276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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