Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_A14
(828 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0680 + 5217633-5219072 31 1.1
11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513 30 2.6
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891... 30 2.6
06_02_0200 - 12946139-12946282,12947636-12947842,12949506-129496... 29 3.4
03_02_0211 - 6436275-6436361,6436969-6437235,6438475-6438543,643... 29 6.0
01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138 29 6.0
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 28 7.9
>01_01_0680 + 5217633-5219072
Length = 479
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/91 (25%), Positives = 39/91 (42%)
Frame = +2
Query: 260 PQVALLVSSCWSPTLACLRYPSTSTSSFRVHSMFSVHYFIQQLVILPYRDKLPAHSVTSL 439
P ALL+ + T P S++S R+H + + + +L + P
Sbjct: 18 PPTALLLPRTTTTTAGAAPAPRRSSASSRLHLLLTAALAVATSYLLLILPRTP------- 70
Query: 440 VLAVAPGQAIVVRVDIGVQLQSLIVISSDDF 532
L+ AP A R + ++ +I+ISSD F
Sbjct: 71 -LSAAPAPAAAARAQVKLEKPVVILISSDGF 100
>11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513
Length = 404
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -3
Query: 313 ETGKRGAPTTRNEKRHLWKLTPVVLETGNV-LLIENHEYGQSLKLDAHVDSYGDRLL 146
ET + P+ H+ K P+V TG+V ++I+ HEY + + A V +Y +L
Sbjct: 182 ETIQLPRPSAFRLSHHICKTLPIVNTTGSVDIIIQEHEYSGRIYM-AMVSTYFPHIL 237
>08_02_0269 +
15087481-15087893,15087978-15088074,15089068-15089112,
15089281-15089492,15090809-15090911,15091002-15091097,
15091405-15091473,15093341-15093588,15093640-15093759,
15093847-15094284,15094503-15094620,15095262-15095303,
15097099-15097161,15097365-15097475,15097730-15097801,
15097875-15097993,15099682-15099745,15100238-15101860
Length = 1350
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +2
Query: 461 QAIVVRVDIGVQLQSLIVISSDDFHPFLLGDQFYFRREKVIDYIVVSGGPQLVRVCEHVR 640
+ I RVD+ Q + V+SSD LL + + +KV ++ V++ VR
Sbjct: 66 KVIAWRVDLDCQRPKISVLSSDGKWIELLKPRMCYYEKKVRSILIT------VQMLHFVR 119
Query: 641 FSCPQESVDQLFDHKTDV 694
CP++ LFDH +V
Sbjct: 120 -KCPKKQQRSLFDHLGEV 136
>06_02_0200 -
12946139-12946282,12947636-12947842,12949506-12949629,
12950167-12950369,12950922-12951620,12951723-12951784,
12952395-12952404,12954905-12957631
Length = 1391
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 377 IQQLVILPYRDKLPAHSVTSLVLAVAPGQAIVVRVDIGVQLQSLIVISSD 526
+ +V++ R + + L+VAP +AI V VD GV+ S+ V+ +D
Sbjct: 148 VSAVVVVDARTLVVLRTAFHGALSVAPPRAIAVAVDAGVEDASVSVVLAD 197
>03_02_0211 -
6436275-6436361,6436969-6437235,6438475-6438543,
6439108-6439236,6439319-6439480,6439558-6439678,
6439813-6439928,6440697-6440762,6441010-6441091,
6441236-6441327,6441430-6441537,6441919-6442013,
6442092-6442234,6442336-6442364,6442452-6442571,
6442645-6442734,6443116-6443181,6443267-6443380,
6443482-6443574
Length = 682
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Frame = -3
Query: 727 AVTITKSL--QDDNVGFMIEELIDRLLRAREPNVFAYAD-KLWSAGHH 593
A+++ +SL +D NV F+++ +D+L+R E VFAY +L G H
Sbjct: 504 AISVIQSLGEEDINVKFLVQ--LDKLIRLLETPVFAYLRLQLLEPGKH 549
>01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138
Length = 244
Score = 28.7 bits (61), Expect = 6.0
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = +2
Query: 299 TLACLRYPSTSTSSFR---VHSMFSVHYFIQQLVIL---PYRDKLPAHSVTSLVLAVAPG 460
+L C++ P+TS SSFR V S F+ H+ I L + D LP + + + G
Sbjct: 140 SLVCIQ-PNTSESSFRCNVVFSSFTGHHQISTLESVRCSSLSDGLPKNYFCIVPKSPGGG 198
Query: 461 QAIVVRVDIGVQL 499
A+++R+ I +L
Sbjct: 199 AAVLLRITIDTKL 211
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +1
Query: 142 PRAGGRRSYPRARPAS---DSARTRGSL*VRRCRSPALQASASTGGASRFELLEPHACLS 312
P+ G RRS P RP + S R G + + S G A F +++P+A LS
Sbjct: 317 PQVGDRRS-PIHRPITLPPTSPRRVGETGTSSAQQSPSERCPSFGRADGFRIMDPYASLS 375
Query: 313 P 315
P
Sbjct: 376 P 376
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,440,164
Number of Sequences: 37544
Number of extensions: 420376
Number of successful extensions: 1504
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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