Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_A14
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78014-1|CAB01428.1|  411|Caenorhabditis elegans Hypothetical pr...    34   0.11 
U80841-1|AAB37939.1|  477|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    29   5.4  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    29   5.4  
J05067-1|AAB59179.1|  313|Caenorhabditis elegans clb-2 protein.        29   5.4  
AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical ...    28   9.4  

>Z78014-1|CAB01428.1|  411|Caenorhabditis elegans Hypothetical
           protein F42E8.1 protein.
          Length = 411

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 23/79 (29%), Positives = 38/79 (48%)
 Frame = -3

Query: 754 TCRPGTTXKAVTITKSLQDDNVGFMIEELIDRLLRAREPNVFAYADKLWSAGHHDIVNDF 575
           TC  GTT  A  I     D+N   +I  + D L +  EP++   AD +  +G    +++ 
Sbjct: 50  TCDYGTTV-AFGIRLERFDENSETIIRFMKDLLNQQDEPSIVEIADDMAHSGEKFTMDEI 108

Query: 574 FPSEVKLITKQERVKIIGR 518
           +   V    K ER++ IG+
Sbjct: 109 WQGFVNNFPKNERIQAIGK 127


>U80841-1|AAB37939.1|  477|Caenorhabditis elegans Hypothetical
           protein C13A10.1 protein.
          Length = 477

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 262 WKLTPVV-LETGNVLLIENHEYGQSLKLDAHVDSYGDRLLWGNNGNV 125
           W   P++ L T +  L E++  G S +LD  V ++G+ +L+   GN+
Sbjct: 320 WLKNPILNLMTSSEFLTEDYGSGPSWRLDTVVSTHGNLVLYDRYGNL 366


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
            K04H4.1b protein.
          Length = 1502

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +3

Query: 171  TCASSFRLCPYSWFSMSKTLPVSSTTGVSFHRWRFSFRVVGAPRLPVSXTRLRPRPASGY 350
            +C S F   P+ + +M+    VSS    SF  W  +   +     PV+ T +RP   S  
Sbjct: 1325 SCLSKFNTMPFMFCNMNSVCHVSSRNDYSF--WLSTDEPMTPMMNPVTGTAIRPY-ISRC 1381

Query: 351  IVCSV 365
             VC V
Sbjct: 1382 AVCEV 1386


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
            K04H4.1a protein.
          Length = 1759

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +3

Query: 171  TCASSFRLCPYSWFSMSKTLPVSSTTGVSFHRWRFSFRVVGAPRLPVSXTRLRPRPASGY 350
            +C S F   P+ + +M+    VSS    SF  W  +   +     PV+ T +RP   S  
Sbjct: 1582 SCLSKFNTMPFMFCNMNSVCHVSSRNDYSF--WLSTDEPMTPMMNPVTGTAIRPY-ISRC 1638

Query: 351  IVCSV 365
             VC V
Sbjct: 1639 AVCEV 1643


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
            protein.
          Length = 1758

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +3

Query: 171  TCASSFRLCPYSWFSMSKTLPVSSTTGVSFHRWRFSFRVVGAPRLPVSXTRLRPRPASGY 350
            +C S F   P+ + +M+    VSS    SF  W  +   +     PV+ T +RP   S  
Sbjct: 1581 SCLSKFNTMPFMFCNMNSVCHVSSRNDYSF--WLSTDEPMTPMMNPVTGTAIRPY-ISRC 1637

Query: 351  IVCSV 365
             VC V
Sbjct: 1638 AVCEV 1642


>J05067-1|AAB59179.1|  313|Caenorhabditis elegans clb-2 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +3

Query: 171 TCASSFRLCPYSWFSMSKTLPVSSTTGVSFHRWRFSFRVVGAPRLPVSXTRLRPRPASGY 350
           +C S F   P+ + +M+    VSS    SF  W  +   +     PV+ T +RP   S  
Sbjct: 136 SCLSKFNTMPFMFCNMNSVCHVSSRNDYSF--WLSTDEPMTPMMNPVTGTAIRPY-ISRC 192

Query: 351 IVCSV 365
            VC V
Sbjct: 193 AVCEV 197


>AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical
           protein Y17G9B.1 protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 533 ENHRKILRSSSEAGRQCRLVQRSP 462
           ENH +I+R +  AGR+ +++Q  P
Sbjct: 160 ENHAEIVRGTIFAGREAKIMQNDP 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,817,809
Number of Sequences: 27780
Number of extensions: 333166
Number of successful extensions: 1068
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)