Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_A14
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   8.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   8.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 64  LCEVLRPRVDDPAEVARXYHRRFRCFPRAGGRRSYPR 174
           LCE  +P V D  ++   Y    RC    GG  ++ +
Sbjct: 221 LCE--KPEVCDYPDIYSGYEGALRCLAHNGGEIAWTK 255


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 64  LCEVLRPRVDDPAEVARXYHRRFRCFPRAGGRRSYPR 174
           LCE  +P V D  ++   Y    RC    GG  ++ +
Sbjct: 221 LCE--KPEVCDYPDIYSGYEGALRCLAHNGGEIAWTK 255


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 64  LCEVLRPRVDDPAEVARXYHRRFRCFPRAGGRRSYPR 174
           LCE  +P V D  ++   Y    RC    GG  ++ +
Sbjct: 221 LCE--KPEVCDYPDIYSGYEGALRCLAHNGGEIAWTK 255


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +2

Query: 545 LGDQFYFRREKVIDYIVVSG 604
           +G + YF +E ++D ++ +G
Sbjct: 489 IGSKMYFIQEGIVDIVMANG 508


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +2

Query: 545 LGDQFYFRREKVIDYIVVSG 604
           +G + YF +E ++D ++ +G
Sbjct: 457 IGSKMYFIQEGIVDIVMANG 476


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 508 QALKLDANVDSYNDRLA 458
           QA  ++AN+DSY +  A
Sbjct: 62  QAWNIEANIDSYTNAAA 78


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 508 QALKLDANVDSYNDRLA 458
           QA  ++AN+DSY +  A
Sbjct: 62  QAWNIEANIDSYTNAAA 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,198
Number of Sequences: 438
Number of extensions: 4259
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)