Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_A13
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.069
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.12
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.16
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.21
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.37
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.069
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = +3
Query: 525 PPAXPXXXPRPXPXXXXPIXPSSHXPXPXPPXXSPXXPXXXXPXPXPXPXP 677
PPA P P P P P P P PP P P P P P P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP---PPGVAGAGPPPPPPPPP 783
Score = 31.9 bits (69), Expect = 0.12
Identities = 18/68 (26%), Positives = 19/68 (27%)
Frame = +3
Query: 474 PPPXXXXXXXPXXLXXXPPAXPXXXPRPXPXXXXPIXPSSHXPXPXPPXXSPXXPXXXXP 653
PP P + PPA P P P P P PP S P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
Query: 654 XPXPXPXP 677
P P P
Sbjct: 796 APQAEPEP 803
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +1
Query: 571 PXPYXPXXTXPPPLPPXXPXXPXXXXXPXPXPXPP 675
P P P P P P P P P P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/53 (28%), Positives = 18/53 (33%)
Frame = +3
Query: 555 PXPXXXXPIXPSSHXPXPXPPXXSPXXPXXXXPXPXPXPXPXSXSXXXXXXPP 713
P P I P+ P P P P P P P P P + + PP
Sbjct: 732 PPPPPPAVIVPT---PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.9 bits (69), Expect = 0.12
Identities = 21/81 (25%), Positives = 22/81 (27%)
Frame = +2
Query: 284 PNSXPXPPXKXXPXXPPPXXLXXPXXPXPXXLXXPLXXPXXAPXXHXXXPXXXXXXXXXX 463
P S P PP PP P P P P P AP P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAP-PIPSKAPPIPSSLPPPAQPAAPVK 182
Query: 464 XXPXSPXXPXXXPPXXXXXXP 526
P +P P PP P
Sbjct: 183 SPPSAPSLPSAVPPMPPKVPP 203
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/77 (23%), Positives = 20/77 (25%)
Frame = +1
Query: 469 PXLPQXPXXXPXPXXSRXXXXPXXXXXXVXXPXXPXPYXPXXTXPPPLPPXXPXXPXXXX 648
P PQ P R P P P + PPP P P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPS--SLPPPAQPAAPVKSPPSA 187
Query: 649 XPXPXPXPPQXPXLXXP 699
P PP P + P
Sbjct: 188 PSLPSAVPPMPPKVPPP 204
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.16
Identities = 16/55 (29%), Positives = 17/55 (30%)
Frame = +3
Query: 474 PPPXXXXXXXPXXLXXXPPAXPXXXPRPXPXXXXPIXPSSHXPXPXPPXXSPXXP 638
PP P PP P P P P P S P P P +P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/47 (27%), Positives = 13/47 (27%)
Frame = +3
Query: 525 PPAXPXXXPRPXPXXXXPIXPSSHXPXPXPPXXSPXXPXXXXPXPXP 665
PP P P P P P P P P P P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Frame = +3
Query: 525 PPAXPXXXPRPXPXXXXPIXPSSHXPXPXPPXXSPXXPXXXXPXP-XPXPXPXS 683
PP P P P P P S P P P +P P P P P S
Sbjct: 1699 PPQMSAPTPPPPPMSVPP--PPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDRS 1750
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/40 (32%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Frame = +1
Query: 571 PXPYXPXXTXPPP--LPPXXPXXPXXXXXPXPXPXPPQXP 684
P P P + PPP PP P P P P P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.21
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 572 PPHIXLXXPPXPXSPPXFPXXPXXXXXXPXSPXXPKXXXSXXPPSPS 712
PP + + P P PP P P P +P P + PP+P+
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA-PPPAPA 481
Score = 29.1 bits (62), Expect = 0.85
Identities = 23/76 (30%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Frame = +1
Query: 469 PXLPQXPXXXPXPXXSRXXXXPXXXXXXVXXPXXPXPYXPXXTXPPPLP---PXXPXXPX 639
P +P P P S P + P P P P PPLP P P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAP--PSLPMGAPAAP-PLPPSAPIAPPLPAGMPAAPPLPP 471
Query: 640 XXXXPXPXPXP-PQXP 684
P P P P P P
Sbjct: 472 AAPAPPPAPAPAPAAP 487
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/60 (28%), Positives = 18/60 (30%)
Frame = +1
Query: 505 PXXSRXXXXPXXXXXXVXXPXXPXPYXPXXTXPPPLPPXXPXXPXXXXXPXPXPXPPQXP 684
P S P P P P + PP LPP P P P PP P
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP-PSLPMGAPAAPPLPPSAP 454
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/61 (24%), Positives = 17/61 (27%)
Frame = +3
Query: 477 PPXXXXXXXPXXLXXXPPAXPXXXPRPXPXXXXPIXPSSHXPXPXPPXXSPXXPXXXXPX 656
PP P P P P P P P+ P P +P P P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPA 483
Query: 657 P 659
P
Sbjct: 484 P 484
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.37
Identities = 24/116 (20%), Positives = 26/116 (22%)
Frame = +1
Query: 352 PXXPXPXXXXXXPXXXXXXXXPXXXXPXXXXXXXXPXXXPXLPQXPXXXPXPXXSRXXXX 531
P P P P P P +P P P
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGI 1091
Query: 532 PXXXXXXVXXPXXPXPYXPXXTXPPPLPPXXPXXPXXXXXPXPXPXPPQXPXLXXP 699
P V P P P P P P P P P P P P + P
Sbjct: 1092 PPVPKPSVAAPPVPKP--SVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Score = 28.7 bits (61), Expect = 1.1
Identities = 29/145 (20%), Positives = 31/145 (21%)
Frame = +2
Query: 278 PXPNSXPXPPXKXXPXXPPPXXLXXPXXPXPXXLXXPLXXPXXAPXXHXXXPXXXXXXXX 457
P P+ P P P P P P P P+ P AP
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Query: 458 XXXXPXSPXXPXXXPPXXXXXXPXXXTXXXXXSXXXXXPPHIXLXXPPXPXSPPXFPXXP 637
P P PP P P PP P P P
Sbjct: 1175 SSGIPPVPKPAAGVPP----VPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
Query: 638 XXXXXXPXSPXXPKXXXSXXPPSPS 712
P P S P S
Sbjct: 1231 VPTAKAPPVPAPSSEAPSVSTPRSS 1255
Score = 27.5 bits (58), Expect = 2.6
Identities = 24/95 (25%), Positives = 28/95 (29%), Gaps = 3/95 (3%)
Frame = +1
Query: 457 PXXXPXLPQXPXXXPXPXXSRXXXXPXXXXXXVXXPXXPXPYXPXXTXP-PPLPPXX--P 627
P P + P P P + P V P P P PP+PP P
Sbjct: 1141 PVPKPSVAAPPV--PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198
Query: 628 XXPXXXXXPXPXPXPPQXPXLXXPXXXLXHSXXPT 732
P P P P P + P L PT
Sbjct: 1199 PVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPT 1233
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/66 (24%), Positives = 18/66 (27%)
Frame = +3
Query: 474 PPPXXXXXXXPXXLXXXPPAXPXXXPRPXPXXXXPIXPSSHXPXPXPPXXSPXXPXXXXP 653
P P P + P P P PS+ P P P P P
Sbjct: 1023 PVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGA 1082
Query: 654 XPXPXP 671
P P P
Sbjct: 1083 PPVPAP 1088
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/58 (27%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Frame = +3
Query: 504 PXXLXXXPPAXPXXXPRPXPXXXXPIXP--SSHXPXPXPPXXSPXXPXXXXPXPXPXP 671
P + P P P P P P S P P P +P P P P P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.143 0.508
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,444,245
Number of Sequences: 5004
Number of extensions: 23479
Number of successful extensions: 188
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -