Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_A13
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   4.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   8.4  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 98  SPTSIASKVNGTSVKSEPRSNTTS 27
           SPT  + + +G+S  + P + TTS
Sbjct: 63  SPTGSSPQHSGSSASTSPAARTTS 86


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/25 (36%), Positives = 9/25 (36%)
 Frame = +1

Query: 601 PPPLPPXXPXXPXXXXXPXPXPXPP 675
           P P P   P  P     P P   PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPP 47


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -3

Query: 99  VTHQYCIESQWNFSEIRTKEQHDQSQLEKKK 7
           + + +C+ +  N +   T  Q+D +Q   KK
Sbjct: 409 IRNTHCVNNNQNDNIQNTNNQNDNNQKNNKK 439


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.143    0.508 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,969
Number of Sequences: 438
Number of extensions: 3983
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)