Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_A12
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993     31   1.6  
11_05_0010 - 18356835-18357080,18357475-18357672,18357780-183580...    29   6.4  
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653...    29   6.4  
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408...    29   6.4  

>07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993
          Length = 678

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 476 SESERPDSLSETLNAFLTENCNYHYSNVSLLLD 574
           S SE+P S+  T++A L +  N H S+V + +D
Sbjct: 545 SRSEKPASIGSTIDAVLLQEGNTHTSDVEMSMD 577


>11_05_0010 - 18356835-18357080,18357475-18357672,18357780-18358046,
            18358870-18359067,18359151-18359417,18359524-18359724,
            18359807-18361363,18361499-18361859,18362602-18363467
          Length = 1386

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
 Frame = +3

Query: 426  RTVQVGPSEFLTLIFSTANLRDRIRSPKP*MHF*LKTATTIIQMSLCYWISFRRNLCPSF 605
            +T+Q GPSEF+T ++ T        +P       + T+ T++  + CY    + N  P F
Sbjct: 1149 QTIQFGPSEFITRVYGTIG---SYNTPSD-----VVTSITLVTNAGCYGPFGQENGIP-F 1199

Query: 606  FFRVYGLVSRT-FRPTARLYGRLLGCQTLTLMHSIKETRSL 725
             F V G  S   F   A LY   +G      M + KE  ++
Sbjct: 1200 DFPVQGNGSIVGFFGHANLYVDAIGVYVTPSMGTRKEEENV 1240


>06_03_0793 +
           24662506-24663512,24664470-24664787,24664996-24665323,
           24665465-24665887,24665960-24666252,24666332-24666605,
           24666856-24667358,24667464-24667785,24667875-24668220,
           24668339-24668997,24669524-24669625,24669656-24670052,
           24670155-24670270,24670360-24670386
          Length = 1704

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 102 HIKNKFKGDCERFVSFFYEISSPT 173
           HI+ KFK  C +  S FY +S  T
Sbjct: 777 HIQEKFKAKCRKSESVFYTVSDAT 800


>05_01_0490 +
           4083768-4083775,4083845-4084336,4084441-4084522,
           4086671-4087357,4087555-4087813,4088435-4088558,
           4089474-4089564
          Length = 580

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 431 SSSGAKRIFNTHFLDSESERPDSLSETLNAFLTENCNY 544
           S  G   +F+    D+E +     S T  A + +NCNY
Sbjct: 449 SDKGTVHVFSLRVKDAEEDAKKGESATAGAQVNDNCNY 486


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,122,222
Number of Sequences: 37544
Number of extensions: 370936
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)