Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_A10
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    32   0.11 
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p...    28   1.8  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    27   3.2  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.4  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   7.4  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   9.8  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 18/83 (21%), Positives = 39/83 (46%)
 Frame = -2

Query: 610  KLREQLQGVEPPVNRTEDDFDAAAKYHVSANVEYARYYVSFIIQFQFHRALCQLAGEHAA 431
            KL E +Q +    ++       A +  +  + +Y ++Y+  ++QF+    L +L G+  +
Sbjct: 897  KLEENVQCISDRFSKGMSGMGYAGEVRLGKSDDYDKWYIDILVQFREEEGLQKLTGQRQS 956

Query: 430  GDPNKKLVDCDIYQSVAAGNALA 362
            G   ++ V   +Y     G A+A
Sbjct: 957  G--GERSVSTIMYLLSLQGLAIA 977


>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 352

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 666 IRCVQKEDAAGRLQLPLTGS*GSSYKAWS-RPSIELRTTSTPQ 541
           +RCV+  +A G   +  TGS   + K W  R S  + T S P+
Sbjct: 118 VRCVRFVEAMGTSPILATGSWDKTLKYWDLRQSTPIATVSLPE 160


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -2

Query: 646 RRCRKTTTATNWKLREQLQGVEPPVNRTEDDFDAAAKYHVSANVEYARYYVSFII 482
           +R ++  T ++WK    +    P VN+ ED FD+        NV      VS +I
Sbjct: 45  QRAKEWLTPSSWKKAISIFS-SPVVNKHEDSFDSKTDEEYLQNVSTTTEDVSMLI 98


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = -1

Query: 263 PAAPRLAAGG----EPADRRAHRLGTDQHGVLHAEPIVGAKREGAGVESSDA 120
           P APR +AG      PA  +   LG   +    A PI  A   G G ++SDA
Sbjct: 329 PVAPRPSAGAGGANPPAASQPGLLGGSSNS---AGPIAAATAAGVGADASDA 377


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 636 RQRLPSEHTVSEQVQGVCERXE 701
           RQ+ PS+HT S  ++G C+  E
Sbjct: 138 RQQKPSDHTYSILLKGFCDAIE 159


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 227 LVLRPQPVVERPEVLQEAVCLHLPLSGQRLHRVRPGLRRTHLQH 358
           L + P+     P++L  ++C++L  +G  L R R  L   H+ H
Sbjct: 542 LTITPRATTTTPDILIHSLCVYLYNNGVSLLRTRAML--CHIYH 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,499
Number of Sequences: 5004
Number of extensions: 50163
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)