Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_A10
(821 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0978 + 9841441-9842169,9842303-9842590,9842768-9843612,984... 31 1.1
06_03_0355 + 19822110-19824491 30 1.9
12_01_0319 + 2440129-2440661,2440875-2440902 30 2.6
12_01_0389 + 3067808-3069121 29 4.5
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34... 29 4.5
02_05_0223 - 26943210-26944623,26944741-26945666 29 4.5
01_06_0409 + 29142409-29142870 29 4.5
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851... 28 7.8
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 28 7.8
02_05_0787 - 31742685-31742702,31742703-31742744,31742993-317430... 28 7.8
>08_01_0978 +
9841441-9842169,9842303-9842590,9842768-9843612,
9843941-9844223,9844303-9844416
Length = 752
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 627 QLPLTGS*GSSYKAWSRPSIELRTTSTPQPSTMCLPT 517
++P G+ ++ W + SIE+ T P PS+ LPT
Sbjct: 405 EIPTLGAAHGTFIQWPKHSIEINITPRPAPSSRPLPT 441
>06_03_0355 + 19822110-19824491
Length = 793
Score = 30.3 bits (65), Expect = 1.9
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = -2
Query: 472 FHRALCQLAGEHAAGDPNKKLVDCDI--YQSVAAGNALANMLKMGSSKPWPDAMEALTGQ 299
+ RAL Q A+ D +K CD Y VA G L +K K + + L
Sbjct: 554 YRRALKQ---NRASFDEYRKKFPCDKPRYCDVAGGGGLVLSVKELEKKRLEEVQQKLAIA 610
Query: 298 REMKADGLLEYFRPLHDWLRA 236
EM + E+F L DW R+
Sbjct: 611 NEMIENFQHEWFSKLDDWARS 631
>12_01_0319 + 2440129-2440661,2440875-2440902
Length = 186
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 278 PPGVLPAAPRLAAGGEPADRRAHRLGTDQHGVLHAEPIVGAKREGAGV 135
PP AAPRL A R RLG+ G ++ + GA+ GA V
Sbjct: 53 PPPRAAAAPRLGAVSLSDIRFVRRLGSGDIGSVYLAEVKGARGGGAAV 100
>12_01_0389 + 3067808-3069121
Length = 437
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 690 RIHPGPVPIRCVQKEDAAGRLQLPLTGS*GSSYKAWSRPSIEL 562
R P P P+R V +D RL + + G G S W PS +L
Sbjct: 83 RSTPSPPPLREVDDDDVVERLVMEMEGGGGGS---WCPPSCDL 122
>03_01_0038 -
340564-341108,341214-341463,341546-341649,341728-343255,
343995-344056,344578-344728
Length = 879
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 673 CSDTVCSEGRRCRKTTTATNWKLREQLQGVEP 578
CS+T+CSEG ++ T T+ E ++G EP
Sbjct: 594 CSETICSEGITLKEQCTCTS--SLELIEGAEP 623
>02_05_0223 - 26943210-26944623,26944741-26945666
Length = 779
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 236 RPQPVVERPEVLQEAVCLHLPLSGQRLHRVRPGLRRTHLQHVCE 367
RP VV++ + +EAV + R+ R+ P LRR ++H+CE
Sbjct: 523 RPLTVVQQEMLRREAVTI----IAHRMGRMDPPLRRECVEHLCE 562
>01_06_0409 + 29142409-29142870
Length = 153
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 687 IHPGPVPIRCVQKEDAAGRLQLPLTGS*GSSYKAWSRPSIE 565
+ P P+ + + +A GR QL T + + WSRP ++
Sbjct: 12 VPPRSAPLGRIWRVEAVGRRQLATTTTTAGGSRRWSRPDLD 52
>07_01_1005 +
8509777-8509968,8510059-8510205,8510326-8510544,
8510652-8510761,8511337-8511391,8511447-8511631,
8512537-8512599,8513713-8513782,8514159-8514242,
8515925-8516159,8516213-8516517
Length = 554
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 585 WSRPSIELRTTSTPQPSTMCLPTSNT 508
WS PS R TS+P S C P + T
Sbjct: 495 WSPPSPHPRATSSPSTSPRCSPRAET 520
>04_03_1002 -
21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -3
Query: 276 SWSTSGRSTTGCGRRTSGPASTSAGNRPT 190
S +S S G GR T+ P+S+SAG RPT
Sbjct: 47 STPSSSSSAAGGGRPTT-PSSSSAGGRPT 74
>02_05_0787 -
31742685-31742702,31742703-31742744,31742993-31743022,
31743337-31744183,31744431-31744560,31744682-31744814
Length = 399
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = -2
Query: 427 DPNKKLVDCDIYQSVAAGNALANMLKMGSSKPWPDAMEALTGQREMKADGLLEYFRPLH 251
DP D + ++ ALAN+ ++ PW D A G ++ +A ++ + LH
Sbjct: 122 DPTTHRPRTDFFAALPQLIALANLRQLVGQLPWDDPAAAAAGLQQAEAAQAAKFGQYLH 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,623,638
Number of Sequences: 37544
Number of extensions: 407971
Number of successful extensions: 1546
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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