Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_A08
(811 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 67 2e-11
03_01_0034 + 318432-318825,318902-319851 67 2e-11
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 67 2e-11
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 67 2e-11
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 66 4e-11
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 66 4e-11
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 66 4e-11
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 63 2e-10
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 40 0.003
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 40 0.003
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 40 0.003
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 40 0.003
08_02_1050 + 23949828-23949981,23950083-23950534,23951599-239516... 29 4.4
08_02_1491 + 27500532-27500972 28 7.6
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 66.9 bits (156), Expect = 2e-11
Identities = 29/32 (90%), Positives = 29/32 (90%)
Frame = -3
Query: 707 AFLHWYPGXGMDEMEFXEAESNMNDLVSEYQQ 612
AFLHWY G GMDEMEF EAESNMNDLVSEYQQ
Sbjct: 573 AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 604
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 66.9 bits (156), Expect = 2e-11
Identities = 29/32 (90%), Positives = 29/32 (90%)
Frame = -3
Query: 707 AFLHWYPGXGMDEMEFXEAESNMNDLVSEYQQ 612
AFLHWY G GMDEMEF EAESNMNDLVSEYQQ
Sbjct: 393 AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 66.9 bits (156), Expect = 2e-11
Identities = 29/32 (90%), Positives = 29/32 (90%)
Frame = -3
Query: 707 AFLHWYPGXGMDEMEFXEAESNMNDLVSEYQQ 612
AFLHWY G GMDEMEF EAESNMNDLVSEYQQ
Sbjct: 414 AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 445
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 66.9 bits (156), Expect = 2e-11
Identities = 29/32 (90%), Positives = 29/32 (90%)
Frame = -3
Query: 707 AFLHWYPGXGMDEMEFXEAESNMNDLVSEYQQ 612
AFLHWY G GMDEMEF EAESNMNDLVSEYQQ
Sbjct: 393 AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 65.7 bits (153), Expect = 4e-11
Identities = 28/32 (87%), Positives = 29/32 (90%)
Frame = -3
Query: 707 AFLHWYPGXGMDEMEFXEAESNMNDLVSEYQQ 612
AFLHWY G GMDEMEF EAESNMNDLV+EYQQ
Sbjct: 393 AFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 65.7 bits (153), Expect = 4e-11
Identities = 28/32 (87%), Positives = 29/32 (90%)
Frame = -3
Query: 707 AFLHWYPGXGMDEMEFXEAESNMNDLVSEYQQ 612
AFLHWY G GMDEMEF EAESNMNDLV+EYQQ
Sbjct: 393 AFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 65.7 bits (153), Expect = 4e-11
Identities = 28/32 (87%), Positives = 29/32 (90%)
Frame = -3
Query: 707 AFLHWYPGXGMDEMEFXEAESNMNDLVSEYQQ 612
AFLHWY G GMDEMEF EAESNMNDLV+EYQQ
Sbjct: 393 AFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3
Query: 707 AFLHWYPGXGMDEMEFXEAESNMNDLVSEYQQ 612
AFLHWY GMDEMEF EAESNMNDLV+EYQQ
Sbjct: 409 AFLHWYTSEGMDEMEFTEAESNMNDLVAEYQQ 440
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -3
Query: 707 AFLHWYPGXGMDEMEFXEAESNMNDLVSEYQQ 612
AF+HWY G GM+E EF EA ++ L +Y++
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -3
Query: 707 AFLHWYPGXGMDEMEFXEAESNMNDLVSEYQQ 612
AF+HWY G GM+E EF EA ++ L +Y++
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -3
Query: 707 AFLHWYPGXGMDEMEFXEAESNMNDLVSEYQQ 612
AF+HWY G GM+E EF EA ++ L +Y++
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -3
Query: 707 AFLHWYPGXGMDEMEFXEAESNMNDLVSEYQQ 612
AF+HWY G GM+E EF EA ++ L +Y++
Sbjct: 484 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 515
>08_02_1050 +
23949828-23949981,23950083-23950534,23951599-23951631,
23952069-23952179,23953175-23953348
Length = 307
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 553 SPAPAPRQTLRPRRRWPP 606
SP+P+P + P RRWPP
Sbjct: 27 SPSPSPLLSRAPSRRWPP 44
>08_02_1491 + 27500532-27500972
Length = 146
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +1
Query: 547 LESPAPAPR-QTLRPRRRWPPGYCW 618
+ +PA APR RPRR W CW
Sbjct: 122 MAAPAAAPRWYGRRPRRTWETDQCW 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,108,433
Number of Sequences: 37544
Number of extensions: 285554
Number of successful extensions: 636
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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