Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_A05
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...   165   7e-42
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...   165   7e-42
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...   165   7e-42
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    58   2e-09
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    32   0.12 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   7.8  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score =  165 bits (401), Expect = 7e-42
 Identities = 82/131 (62%), Positives = 97/131 (74%), Gaps = 2/131 (1%)
 Frame = -2

Query: 721 VKNXSXQGMXXXYVAGDSQNNPPKGAADL--QLKSLG*PSWSXSNGYTPVLDCHTAHIAC 548
           VKN S + +    V GDS+N+PP G A    Q+  L  P    S GY+PVLDCHTAHIAC
Sbjct: 310 VKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPG-QISAGYSPVLDCHTAHIAC 368

Query: 547 KFAEIKEKADRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR 368
           KFAE+ EK DRR+GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ PLGRFAVRDMR
Sbjct: 369 KFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMR 428

Query: 367 QTVAVGVIKAV 335
           QTVAVGVIKAV
Sbjct: 429 QTVAVGVIKAV 439


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score =  165 bits (401), Expect = 7e-42
 Identities = 82/131 (62%), Positives = 97/131 (74%), Gaps = 2/131 (1%)
 Frame = -2

Query: 721 VKNXSXQGMXXXYVAGDSQNNPPKGAADL--QLKSLG*PSWSXSNGYTPVLDCHTAHIAC 548
           VKN S + +    V GDS+N+PP G A    Q+  L  P    S GY+PVLDCHTAHIAC
Sbjct: 310 VKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPG-QISAGYSPVLDCHTAHIAC 368

Query: 547 KFAEIKEKADRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR 368
           KFAE+ EK DRR+GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ PLGRFAVRDMR
Sbjct: 369 KFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMR 428

Query: 367 QTVAVGVIKAV 335
           QTVAVGVIKAV
Sbjct: 429 QTVAVGVIKAV 439


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score =  165 bits (401), Expect = 7e-42
 Identities = 82/131 (62%), Positives = 97/131 (74%), Gaps = 2/131 (1%)
 Frame = -2

Query: 721 VKNXSXQGMXXXYVAGDSQNNPPKGAADL--QLKSLG*PSWSXSNGYTPVLDCHTAHIAC 548
           VKN S + +    V GDS+N+PP G A    Q+  L  P    S GY+PVLDCHTAHIAC
Sbjct: 310 VKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPG-QISAGYSPVLDCHTAHIAC 368

Query: 547 KFAEIKEKADRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR 368
           KFAE+ EK DRR+GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ PLGRFAVRDMR
Sbjct: 369 KFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMR 428

Query: 367 QTVAVGVIKAV 335
           QTVAVGVIKAV
Sbjct: 429 QTVAVGVIKAV 439


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
 Frame = -2

Query: 598 SNGYTPVLDCHTAHIACKFAEIKEKADRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVE 419
           + GY+ V+  HTA     FA++  K D+ T + ++  P     G   I  L    P+C+E
Sbjct: 574 TTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCME 632

Query: 418 SFQEFPPLGRFAVRDMRQTVAVG-VIKAVN 332
            F+++  +GRF +RD   TVAVG V+K ++
Sbjct: 633 RFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -2

Query: 433 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 341
           PLC+   +E P LGRF +R    TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +3

Query: 291 SAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDSTH--RGLEGTKLTMAA 464
           S  +VTLPPPAS   ++  T T T  + S ++     G+ + +++        +  ++++
Sbjct: 183 STDIVTLPPPAS-STSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSS 241

Query: 465 SPDLMDFGLTSVDLPVRRSAFSLIS 539
           S  L    +TS   PV  S+ SL S
Sbjct: 242 SSVLPTSIITSTSTPVTVSSSSLSS 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,014
Number of Sequences: 5004
Number of extensions: 51087
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)