Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_A04
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0487 - 18014469-18014660,18014935-18015016,18015297-180155... 31 0.82
08_02_0450 - 17266977-17267165,17268017-17268053,17268139-172695... 31 0.82
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 31 1.1
01_04_0068 + 15693131-15693533,15693604-15693803,15693879-156941... 30 1.9
07_01_0054 - 417945-418157 30 2.5
11_04_0167 + 14382976-14385244,14389373-14389842 29 4.4
07_03_0142 - 14251959-14252230,14252244-14252316 28 7.7
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 28 7.7
01_05_0224 + 19485296-19485493,19485584-19487817,19487903-194881... 28 7.7
>09_04_0487 -
18014469-18014660,18014935-18015016,18015297-18015548,
18015634-18017789
Length = 893
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 512 LYWLARYLMRKAALVLAEGSSCAS--AAPNAPHPPRDTSERH 631
+ W R ++ AA VLA GSS S AAP P PP S RH
Sbjct: 449 ILWHRRDIILSAA-VLAAGSSTPSSAAAPAPPSPPEPPSPRH 489
>08_02_0450 -
17266977-17267165,17268017-17268053,17268139-17269514,
17285369-17286055,17286146-17286343
Length = 828
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 512 LYWLARYLMRKAALVLAEGSSCAS--AAPNAPHPPRDTSERH 631
+ W R ++ AA VLA GSS S AAP P PP S RH
Sbjct: 495 ILWHRRDIILSAA-VLAAGSSTPSSAAAPAPPSPPEPPSPRH 535
>04_04_0706 + 27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -1
Query: 302 KVLRKKRSIVKRSSGRCLSGISQWRSWLKKPIDSARGLNESVPKYSCAVDSVFPP 138
++L RS+VKR + L ++ S ++K AR LN S P + VD P
Sbjct: 1499 RMLEHSRSVVKRKALGILCETAKGNSLIQKKQKKARKLNHSTPATALQVDKSSAP 1553
>01_04_0068 +
15693131-15693533,15693604-15693803,15693879-15694162,
15694251-15694428
Length = 354
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +2
Query: 155 PRHKNISEHFH*DPSHYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSK 334
PRH +++ H P S S TIS+G T++ S + SS +SSS S
Sbjct: 50 PRHYTVAQAVH-HPPWATSGVSCTISSGSSATSSCTISSGSSATSSCTISSSSSGSSTST 108
Query: 335 VS 340
VS
Sbjct: 109 VS 110
>07_01_0054 - 417945-418157
Length = 70
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +2
Query: 497 CSLXSLYWLARYLMRKAALVLAEGSSCASAAPNAPHP 607
CS+ S W R L K AEG S PN P P
Sbjct: 9 CSVKSKTWNERKLCTKRGTCRAEGFDYGSCYPNRPRP 45
>11_04_0167 + 14382976-14385244,14389373-14389842
Length = 912
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 430 TGRVTTPSQLFSYGPDYIVLDELLFXVAVLAGQVPDEE 543
TG+VTT +++YG ++L E++ VL +PD+E
Sbjct: 758 TGKVTTKVDVYAYG---VILMEMITGRKVLDDSLPDDE 792
>07_03_0142 - 14251959-14252230,14252244-14252316
Length = 114
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 314 TLSW-KVLRKKRSIVKRSSGRCLSGISQWR 228
+L W ++ ++R + +R SGRC G+ WR
Sbjct: 6 SLRWMRMAGRRRWLKRRRSGRCRRGLRSWR 35
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 581 SAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTRASPCSDCTKVSXTFS 730
+AA APHPP+ E A Y R+ +D Y + + A P + + S + S
Sbjct: 94 AAAGAAPHPPQQQREDPA-FYGRRRYDDEYSNNSSARPRRNSSNSSSSSS 142
>01_05_0224 +
19485296-19485493,19485584-19487817,19487903-19488154,
19488235-19488345,19488435-19488516,19488791-19488982
Length = 1022
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Frame = +2
Query: 512 LYWLARYLMRKAALVLAEGSSCAS-------AAPNAPHPPRDTSERH 631
+ W R ++ AA VLA GSS S AAP P PP+ S RH
Sbjct: 536 ILWHRRDIILSAA-VLAAGSSTPSSSQAMTAAAPAPPSPPKPPSPRH 581
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,933,296
Number of Sequences: 37544
Number of extensions: 381446
Number of successful extensions: 1401
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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