Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_A01
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   3.6  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.2  

>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 250 PNYYRRTISRQRTCWSPAKSTVVVGSLC 167
           PN   +T S    C+SP KS   + SLC
Sbjct: 101 PNELFKTSSMSSDCYSPQKSRESLNSLC 128


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 241 YRRTISRQRTCWSPAKSTVVVGSLCAYKT*EA*KRRINRQRKTIR 107
           YRR +   R  W P  S +++    AY   +A K   N  ++ I+
Sbjct: 54  YRRLLKATRRFWDPMASQILISHFQAYAR-KARKSNPNPHKRRIK 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,604,797
Number of Sequences: 5004
Number of extensions: 22327
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)