Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_P23
(972 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po... 31 0.25
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.75
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 3.0
SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|... 27 4.0
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 27 4.0
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 27 5.3
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 7.0
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 26 7.0
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 26 7.0
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 26 9.2
>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 471
Score = 31.1 bits (67), Expect = 0.25
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 284 QEFSSCCLLSMQRS*WSARELCQHKFM 364
++F SCCL WSA+EL QH F+
Sbjct: 234 RDFVSCCLDLNPNMRWSAKELLQHPFI 260
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.75
Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Frame = +3
Query: 261 LRDSQCGTKNSVPAVCCPCNAADGQQGNCVNINSCPYVLQLLKNPNEANLNYVRG-SVCQ 437
L + C T SVP P + NC S PY + + N SV
Sbjct: 445 LATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPY 504
Query: 438 GSEQQSICCVTAPQSTAVTTTP 503
S + T ST VT+TP
Sbjct: 505 TSTPVTSSNYTISSSTPVTSTP 526
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/37 (32%), Positives = 14/37 (37%)
Frame = +3
Query: 261 LRDSQCGTKNSVPAVCCPCNAADGQQGNCVNINSCPY 371
L + C T SVP P + NC S PY
Sbjct: 422 LTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY 458
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 351 NINSCPYVLQLLKNPNEANLN 413
+INS PY +++NP+E NL+
Sbjct: 305 SINSVPYTSNIVENPSEDNLS 325
>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 623 CGRTTNDFVSDGYVPAATLPFRIRGGGSHLALAGVHPLRS 504
CG T+ D + P L F+ G + A G H LR+
Sbjct: 49 CGLTSEDLEAGELPPVDVLTFKKSGKPYYFAFGGCHRLRA 88
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 464 CYCATVDGSDHDPQTEAGARLP 529
CY A D DH+P+TE + P
Sbjct: 138 CYLAYPDSRDHEPRTEGESSSP 159
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.6 bits (56), Expect = 5.3
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 378 QLLK-NPNEANLNYVRGSVCQGSEQQSICCVTAPQSTAVTTTPRPKR 515
QLLK NP + Y+RGS G S C A S +V + P R
Sbjct: 342 QLLKPNPTQPYF-YLRGSFDTGHSASSSICSAAVDSESVNSADFPHR 387
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 47 RVGFILLEPTLENVFNLDIHRGCSGDPDQKCCCTI 151
R GF+ L L NV + D+ + GD D T+
Sbjct: 1073 RRGFLRLNKKLGNVIHYDLRKSSEGDVDSNYVTTM 1107
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 7.0
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 46 TCRFYIIGT-YIGKCF*FGHSSWLFWRSRPKVLLHNHAGHRTDLTVIAYPCM 198
TC+F + + ++ KC SS L + L H GH ++T I C+
Sbjct: 273 TCKFSKLNSLFLSKCIGLTDSSLLSLTKLSQSLTTLHLGHCYEITDIGVQCL 324
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 390 NPNEANLNYVRGSVCQGSEQQSICCVTAP 476
+P+ A LN++ S C QS+ C T P
Sbjct: 285 HPDPARLNFLSFSFCVNPMNQSLDCNTTP 313
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 507 PKRVHACQSEMTATPPNPEGKCCG 578
P+ + A Q M T PEG+ CG
Sbjct: 497 PRSLQASQFGMLCTSDTPEGEACG 520
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,895
Number of Sequences: 5004
Number of extensions: 64861
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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