Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_P23
(972 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 35 0.11
02_02_0402 - 9852407-9853519 31 1.8
07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595 29 4.2
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199... 29 5.6
09_06_0132 - 21042653-21042873,21042950-21043027,21043106-210431... 29 5.6
04_04_1466 - 33799104-33799229,33799659-33799669,33800052-338002... 29 5.6
12_02_0352 - 17862577-17863528,17864076-17864827 29 7.4
07_01_0240 - 1749674-1750514,1751157-1752040 29 7.4
07_03_0510 - 18908224-18908247,18909075-18909347 28 9.8
06_03_0661 + 23225514-23227073 28 9.8
03_02_0102 + 5637469-5639064 28 9.8
02_02_0101 - 6788090-6788356,6788770-6788940 28 9.8
>02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 34.7 bits (76), Expect = 0.11
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 3/139 (2%)
Frame = +3
Query: 180 NCVSVYECQALLAILNNQRRTQQDEKFLRDSQCGTKNSVPAVCCPC-NAADGQQGNCVNI 356
N S +E +AL N R Q FL S C NS+P CC + A +C N+
Sbjct: 632 NLASCHELEALPMSFGNLNRLQ----FLSLSDCYKLNSLPESCCQLHDLAHLDLSDCYNL 687
Query: 357 NSCPYVLQLLKNPNEANLNYVRGSVCQGSE--QQSICCVTAPQSTAVTTTPRPKRVHACQ 530
P + L + L Y+ + C + +S+C +T + ++ R + + +C
Sbjct: 688 GKLPDCIDQL-----SKLEYLNMTSCSKVQALPESLCKLTMLRHLNLSYCLRLENLPSCI 742
Query: 531 SEMTATPPNPEGKCCGRDI 587
++ + +G RD+
Sbjct: 743 GDLQLQSLDIQGSFLLRDL 761
>02_02_0402 - 9852407-9853519
Length = 370
Score = 30.7 bits (66), Expect = 1.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 468 TAPQSTAVTTTPRPKRVHACQSEMTATPPNPEGKCCGRDIAV 593
+ P+S++ ++ RPK VH Q++ PP P+ R A+
Sbjct: 161 SGPESSSTASSKRPKTVHRQQNKSPLPPPPPKRAARARFAAI 202
>07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595
Length = 904
Score = 29.5 bits (63), Expect = 4.2
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -3
Query: 631 VDDAGAPPTILSPTAMSRPQHFPSGL--GGVAVISLWQACTRFGLGVVVTAVDCGAVTQH 458
V DA A P + A+ R H + GG V+S W+ F + +VV V H
Sbjct: 809 VVDAAADPAAQAGVALFRKLHARTTTTEGGAVVVSAWKELADFWVRMVVYLAPSSDVEGH 868
Query: 457 MLCCSD 440
+ +D
Sbjct: 869 AMALAD 874
>11_06_0315 +
22318155-22318210,22319743-22319769,22319868-22319990,
22320867-22321110,22321487-22321981
Length = 314
Score = 29.1 bits (62), Expect = 5.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 283 VPHWESLKNFSSCWVLL*LFNMARSAWHSY 194
+P W S+K CW++L FN A + +Y
Sbjct: 70 LPFWPSMKLIFICWLVLPYFNGAAFVYQNY 99
>09_06_0132 -
21042653-21042873,21042950-21043027,21043106-21043167,
21043504-21043578,21043664-21043752,21043825-21043905,
21044939-21045076,21046299-21046429,21046521-21046592,
21047218-21047275,21047362-21047461,21047544-21047617,
21047701-21047836,21047913-21048137,21048211-21048446,
21048949-21049081,21049195-21049484
Length = 732
Score = 29.1 bits (62), Expect = 5.6
Identities = 21/69 (30%), Positives = 28/69 (40%)
Frame = +3
Query: 270 SQCGTKNSVPAVCCPCNAADGQQGNCVNINSCPYVLQLLKNPNEANLNYVRGSVCQGSEQ 449
+Q T VP C N D Q NSCPY +Q L + ++ V + S+
Sbjct: 151 AQSTTSRKVP---CSSNLCDLQNACRSKSNSCPYSIQYLSDNTSSSGVLVEDVLYLTSDS 207
Query: 450 QSICCVTAP 476
VTAP
Sbjct: 208 AQSKIVTAP 216
>04_04_1466 -
33799104-33799229,33799659-33799669,33800052-33800200,
33800261-33800299,33800690-33800746,33800839-33801628,
33801705-33801980,33802051-33802117,33802211-33802285,
33802618-33802812,33802927-33803076,33803152-33803522,
33804070-33804193,33804246-33804275,33804306-33804417,
33804919-33804985,33805138-33805180,33805768-33805872
Length = 928
Score = 29.1 bits (62), Expect = 5.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 510 KRVHACQSEMTATPPNPEGKCCGRDIA 590
+++H+C+S M+ +PP + C +D A
Sbjct: 802 RKLHSCKSSMSPSPPKSRNRQCLKDTA 828
>12_02_0352 - 17862577-17863528,17864076-17864827
Length = 567
Score = 28.7 bits (61), Expect = 7.4
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -3
Query: 670 PXXXCXMRHSQIRVDDAGAPPTILSPTAMSRPQH 569
P C H +DD G P+ +P + + P+H
Sbjct: 296 PNPLCCTEHQHSHLDDMGTSPSPATPLSTTYPEH 329
>07_01_0240 - 1749674-1750514,1751157-1752040
Length = 574
Score = 28.7 bits (61), Expect = 7.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 66 WNLHWKMFLIWTFIVAVLAIQTKSVVAQSCR 158
W LH L WT +V + AI T ++VA R
Sbjct: 66 WLLHTFCILQWTVLVQIAAINTITLVATDAR 96
>07_03_0510 - 18908224-18908247,18909075-18909347
Length = 98
Score = 28.3 bits (60), Expect = 9.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 560 GREVLRPGHSRRRQNRWWCARIIDS 634
G+E G RR RWW R++D+
Sbjct: 10 GKEEEEGGGEVRRARRWWVGRVVDT 34
>06_03_0661 + 23225514-23227073
Length = 519
Score = 28.3 bits (60), Expect = 9.8
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 24 QQSPNLSDV*VLYYWNLHWKMFLIWTFIVAVLAIQTKSV-VAQSCRTPNGLNGNCVSVYE 200
QQS L V + Y++ + M+L+ + ++A++A+Q +V L N +SV
Sbjct: 28 QQSVRLKYVKLGYHYLISHGMYLLLSPLMALVAVQLSTVSPGDIADLWEQLRFNLLSVVA 87
Query: 201 CQALLAILN 227
C LL L+
Sbjct: 88 CSTLLVFLS 96
>03_02_0102 + 5637469-5639064
Length = 531
Score = 28.3 bits (60), Expect = 9.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 276 IGSPSRTSHLAGFSSDYLIWPGVPGIHTRIRNY 178
IG P + HL + +P VP +T IRN+
Sbjct: 299 IGQPDKAKHLLKEMHELGCYPDVPAYNTAIRNF 331
>02_02_0101 - 6788090-6788356,6788770-6788940
Length = 145
Score = 28.3 bits (60), Expect = 9.8
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 85 CF*FGHSSWLFWR--SRPKVLLHNHAGH 162
CF H+S++ WR SRPK++ + GH
Sbjct: 75 CFPVAHTSFMSWRDESRPKIVNNLRRGH 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,440,414
Number of Sequences: 37544
Number of extensions: 512236
Number of successful extensions: 1467
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2823252340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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