Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_P23
         (972 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF016687-11|ABL01528.1|  646|Caenorhabditis elegans Hypothetical...    29   5.0  
AF099915-8|AAC68768.2|  231|Caenorhabditis elegans Hypothetical ...    29   6.6  
Z74042-2|CAA98528.2|  379|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AJ561210-1|CAD99212.1|  151|Caenorhabditis elegans NAS-20 protei...    28   8.7  

>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/76 (22%), Positives = 31/76 (40%)
 Frame = +3

Query: 276 CGTKNSVPAVCCPCNAADGQQGNCVNINSCPYVLQLLKNPNEANLNYVRGSVCQGSEQQS 455
           C ++    + CCP +  +     C+     P + +++  P    +N     VC  +EQ S
Sbjct: 244 CDSECERGSKCCPGSITNSNYHACL-----PALTKIMNEPISNEINPTIAMVCGANEQYS 298

Query: 456 ICCVTAPQSTAVTTTP 503
            C  +   S    +TP
Sbjct: 299 ACFSSCQPSCQDPSTP 314


>AF016687-11|ABL01528.1|  646|Caenorhabditis elegans Hypothetical
           protein T21D12.7 protein.
          Length = 646

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 10/112 (8%)
 Frame = +3

Query: 222 LNNQRRTQQDEKFLRDSQCGTKNSVPAVCCP-----CNAADGQQGNC-----VNINSCPY 371
           +NN     +D+   R+  C +K      CCP     C      + NC     VN     Y
Sbjct: 192 INNIATCMEDKHCPRNYTCTSKVGKKGACCPSKEFVCGTPFEIKNNCRKPEPVNTWWFDY 251

Query: 372 VLQLLKNPNEANLNYVRGSVCQGSEQQSICCVTAPQSTAVTTTPRPKRVHAC 527
                K    +N      S     +    C  T P +  V + PR  + H C
Sbjct: 252 RKGECKRAEHSNCEEHFNSFANQEQCADYCVGTCPNNLEVHSNPRTGQPHLC 303


>AF099915-8|AAC68768.2|  231|Caenorhabditis elegans Hypothetical
           protein E02H9.2 protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 423 GSVCQGSEQQS--ICCVTAPQSTAVTTTPRP 509
           GS C      +  +C + AP +T  TTTP+P
Sbjct: 174 GSACDPDRHNNDGLCSLGAPTTTTTTTTPKP 204


>Z74042-2|CAA98528.2|  379|Caenorhabditis elegans Hypothetical
           protein T11F9.3 protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 297 PAVCCPCNAADGQQGNCVNINSCPYVLQLLKNPNEANL--NYVRGSVCQGSEQQSICCVT 470
           PA C  C   DG  G   + +   YVL+  K  + + +  NY +G       + +   +T
Sbjct: 226 PANCEECLCTDGFNGQLCDQHEGVYVLEAKKEWDASGVRNNYRKGIETNTMPEYTYFALT 285

Query: 471 APQSTAV 491
           AP+ + +
Sbjct: 286 APEGSTI 292


>AJ561210-1|CAD99212.1|  151|Caenorhabditis elegans NAS-20 protein
           protein.
          Length = 151

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 297 PAVCCPCNAADGQQGNCVNINSCPYVLQLLKNPNEANL--NYVRGSVCQGSEQQSICCVT 470
           PA C  C   DG  G   + +   YVL+  K  + + +  NY +G       + +   +T
Sbjct: 69  PANCEECLCTDGFNGQLCDQHEGVYVLEAKKEWDASGVRNNYRKGIETNTMPEYTYFALT 128

Query: 471 APQSTAV 491
           AP+ + +
Sbjct: 129 APEGSTI 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,103,405
Number of Sequences: 27780
Number of extensions: 409910
Number of successful extensions: 1263
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2521399358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)