Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_P22
(849 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 30 0.36
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 30 0.36
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 29 0.83
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 29 1.1
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 28 1.9
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 2.5
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 26 5.9
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 5.9
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c... 26 5.9
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 30.3 bits (65), Expect = 0.36
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 520 RIEAPTVFTCIPMSNIVKQRQMEDKTKITQDYVHIPDKPVLQRAIAVLPSTLQ 678
RIE +F C+P+ + R ++ K D VHI K +R + PSTL+
Sbjct: 409 RIEVTGIFRCVPVRLNPRMRTVKSLFKTYVDVVHI--KKQDKRRLGTDPSTLE 459
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 30.3 bits (65), Expect = 0.36
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Frame = +1
Query: 388 DQY--SSIPSISYKSQDQMNVTLANETSDKASEID---DNFQALTT----ETLRIEAPTV 540
D+Y SSI S+ +D M +SD A I N + +L ++A +
Sbjct: 292 DRYDTSSIQSLKNAPRDSMESESFCSSSDDAKPITFVTKNLRKFPIPEWRSSLEVQAESE 351
Query: 541 FTCIPMSNIVKQRQMEDKTKITQDYVHIPDKPVLQRAIAVLPSTLQLRXGIVTPR 705
+C+P+ ++ ++E K Q ++ P +QR + L + G +T R
Sbjct: 352 QSCLPLYPLLPVEEVEGMKKFVQTMLYDSIYPFMQRCVRAWEEDLTPQYGNLTTR 406
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 29.1 bits (62), Expect = 0.83
Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Frame = +1
Query: 265 KEIYII--EIKPSLSGTYPQFIDSQGIPLQILQNTPL----HVVTKDDQYSSIPSIS--- 417
+++Y++ E +S + I +G+ ++I +N L V D Q + I +S
Sbjct: 22 RQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDLSSQY 81
Query: 418 YKSQDQMNVTLANETSDKASEIDDNFQALTTETLRIEAPTVFTCIPM--SNIVKQRQMED 591
+ ++D + V A T K +E++ + L E F C+ + +++ KQ ++ D
Sbjct: 82 FLTEDDIGVPRAKVTVSKLAELNQYVPVSVVDELSTEYLKNFKCVVVTETSLTKQLEIND 141
Query: 592 KT 597
T
Sbjct: 142 FT 143
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +1
Query: 382 KDDQYSSIPSISYKSQDQMNVTLANETSDKASEIDDNFQALTTETLRIEAPTVFTCIPMS 561
+ DQYS + +DQ N ++N +++ + D+ ET+ +F +
Sbjct: 399 ESDQYSDVEDTEVIIEDQDNQEISNHVAEEKIDSDEE------ETIDDAKSEMFVDLSEE 452
Query: 562 NIVKQ-RQMEDKTKITQDYVHIPDKPVLQ 645
V+Q + K K Q+ + PD+ LQ
Sbjct: 453 EEVRQYEEYRKKQKELQEELEFPDEVELQ 481
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 538 VFTCIPMSNIVKQRQMEDKTK 600
+F IP+SN++ Q++M+DK K
Sbjct: 443 LFETIPLSNLLAQKRMKDKLK 463
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 225 GYI*HEGGKSKTSKRNLHN*NKTKFIWYIPTVYR 326
G + E KSK SK+N H N +W+I + R
Sbjct: 754 GELNEEPKKSKKSKKNNHEINSLTALWFIHSFVR 787
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 359 FCKICRGMPCESINCGYVPDKLG 291
FCK C P E I C + PD+ G
Sbjct: 237 FCKKCLLAPHEVICCAFCPDRDG 259
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 523 IEAPTVFTCIPMSNIVKQRQME--DKTKITQDYVHIPDKPVL 642
IEA + T + S +V Q+ D+TK Y H+P P++
Sbjct: 638 IEAFGINTFVEASYLVSDNQLVLIDQTKAIDSYDHVPISPLI 679
>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 298
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 648 SNCSTTINTT-ATXRYCYTSXSYFPSGAIWTYTXYKEDNI 764
SN T + T RY YT+ +PSG+I K+ +I
Sbjct: 213 SNVLTAVKTVFPNVRYAYTTIPTYPSGSIGFVVASKDASI 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,637
Number of Sequences: 5004
Number of extensions: 64260
Number of successful extensions: 178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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