Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_P22
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852...    29   4.7  
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668...    29   4.7  

>03_02_0651 +
           10183050-10184167,10184350-10184974,10185023-10185208,
           10185325-10185660
          Length = 754

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +1

Query: 640 LQRAIAVLPSTLQLRXGIVTPR*ATSPRVRFGPIXGIKRIISPNEVNDLKPKQLKQD 810
           LQRA      TL+    +  P  +TSP  +   +  I  ++ PN +N ++P  LK D
Sbjct: 394 LQRATKECADTLRPGSSVAVPLPSTSPLHQREGVTHIIHVLGPN-MNPMRPDCLKND 449


>01_05_0501 +
           22764978-22765896,22766087-22766349,22766613-22766836,
           22767419-22767749,22767968-22768372
          Length = 713

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = +1

Query: 367 LHVVTKDDQYSSIPSISYKSQDQMNVTLANETSDK--ASEIDDNFQALTTETLRIEAPTV 540
           L+ + KD++++ +    Y+    +   L +   DK  A ++ DN + L    + +E    
Sbjct: 389 LYKLVKDEEFARL---QYRKNTSLLQRLESGDHDKLHAEKVRDNIEELQARIISLEEAVG 445

Query: 541 FTCIPMSNIVKQRQMEDKTKITQDYVHI 624
            TC+ +S +  +       +++   VH+
Sbjct: 446 LTCLSISKLRDEELYPQIIELSAGLVHM 473


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,415,557
Number of Sequences: 37544
Number of extensions: 348289
Number of successful extensions: 708
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)