Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_P22
         (849 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D88812-1|BAB46921.1|  729|Homo sapiens cerebral protein-6 protein.     33   0.99 
D87462-1|BAA13401.2|  759|Homo sapiens KIAA0272 protein.               33   0.99 
BC001596-1|AAH01596.1|  729|Homo sapiens BRCA1 associated protei...    33   0.99 
AY130008-1|AAN05092.1|  566|Homo sapiens MU-MB-17.261 protein.         33   0.99 
AF045581-1|AAC15970.1|  729|Homo sapiens BRCA1 associated protei...    33   0.99 

>D88812-1|BAB46921.1|  729|Homo sapiens cerebral protein-6 protein.
          Length = 729

 Score = 33.5 bits (73), Expect = 0.99
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 7/144 (4%)
 Frame = +1

Query: 364 PLHVVTKDDQYSSIPSISYKSQDQMNVTLANETSDKASEIDDNFQALTTETLRIEAPTVF 543
           PL + T     S  P+++  +  Q + T +NE++D ASEI   F +     +R   PT  
Sbjct: 462 PLSIKTSSGAGS--PAVAVPTHSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRP 519

Query: 544 TCIPMSNIVKQRQMEDKTKITQDYVHIPDKPVLQRAIAVLPSTLQL-RXGIVTPR*AT-- 714
           +    S+I K    ED + +  D +   ++ V      +    L L   G+++P   T  
Sbjct: 520 SSPVTSHISKVLFGEDDSLLRVDCIRY-NRAVRDLGPVISTGLLHLAEDGVLSPLALTEG 578

Query: 715 ----SPRVRFGPIXGIKRIISPNE 774
               SP +R  PI G +   SP E
Sbjct: 579 GKGSSPSIR--PIQGSQGSSSPVE 600


>D87462-1|BAA13401.2|  759|Homo sapiens KIAA0272 protein.
          Length = 759

 Score = 33.5 bits (73), Expect = 0.99
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 7/144 (4%)
 Frame = +1

Query: 364 PLHVVTKDDQYSSIPSISYKSQDQMNVTLANETSDKASEIDDNFQALTTETLRIEAPTVF 543
           PL + T     S  P+++  +  Q + T +NE++D ASEI   F +     +R   PT  
Sbjct: 492 PLSIKTSSGAGS--PAVAVPTHSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRP 549

Query: 544 TCIPMSNIVKQRQMEDKTKITQDYVHIPDKPVLQRAIAVLPSTLQL-RXGIVTPR*AT-- 714
           +    S+I K    ED + +  D +   ++ V      +    L L   G+++P   T  
Sbjct: 550 SSPVTSHISKVLFGEDDSLLRVDCIRY-NRAVRDLGPVISTGLLHLAEDGVLSPLALTEG 608

Query: 715 ----SPRVRFGPIXGIKRIISPNE 774
               SP +R  PI G +   SP E
Sbjct: 609 GKGSSPSIR--PIQGSQGSSSPVE 630


>BC001596-1|AAH01596.1|  729|Homo sapiens BRCA1 associated protein-1
           (ubiquitin carboxy-terminal hydrolase) protein.
          Length = 729

 Score = 33.5 bits (73), Expect = 0.99
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 7/144 (4%)
 Frame = +1

Query: 364 PLHVVTKDDQYSSIPSISYKSQDQMNVTLANETSDKASEIDDNFQALTTETLRIEAPTVF 543
           PL + T     S  P+++  +  Q + T +NE++D ASEI   F +     +R   PT  
Sbjct: 462 PLSIKTSSGAGS--PAVAVPTHSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRP 519

Query: 544 TCIPMSNIVKQRQMEDKTKITQDYVHIPDKPVLQRAIAVLPSTLQL-RXGIVTPR*AT-- 714
           +    S+I K    ED + +  D +   ++ V      +    L L   G+++P   T  
Sbjct: 520 SSPVTSHISKVLFGEDDSLLRVDCIRY-NRAVRDLGPVISTGLLHLAEDGVLSPLALTEG 578

Query: 715 ----SPRVRFGPIXGIKRIISPNE 774
               SP +R  PI G +   SP E
Sbjct: 579 GKGSSPSIR--PIQGSQGSSSPVE 600


>AY130008-1|AAN05092.1|  566|Homo sapiens MU-MB-17.261 protein.
          Length = 566

 Score = 33.5 bits (73), Expect = 0.99
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 7/144 (4%)
 Frame = +1

Query: 364 PLHVVTKDDQYSSIPSISYKSQDQMNVTLANETSDKASEIDDNFQALTTETLRIEAPTVF 543
           PL + T     S  P+++  +  Q + T +NE++D ASEI   F +     +R   PT  
Sbjct: 299 PLSIKTSSGAGS--PAVAVPTHSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRP 356

Query: 544 TCIPMSNIVKQRQMEDKTKITQDYVHIPDKPVLQRAIAVLPSTLQL-RXGIVTPR*AT-- 714
           +    S+I K    ED + +  D +   ++ V      +    L L   G+++P   T  
Sbjct: 357 SSPVTSHISKVLFGEDDSLLRVDCIRY-NRAVRDLGPVISTGLLHLAEDGVLSPLALTEG 415

Query: 715 ----SPRVRFGPIXGIKRIISPNE 774
               SP +R  PI G +   SP E
Sbjct: 416 GKGSSPSIR--PIQGSQGSSSPVE 437


>AF045581-1|AAC15970.1|  729|Homo sapiens BRCA1 associated protein 1
           protein.
          Length = 729

 Score = 33.5 bits (73), Expect = 0.99
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 7/144 (4%)
 Frame = +1

Query: 364 PLHVVTKDDQYSSIPSISYKSQDQMNVTLANETSDKASEIDDNFQALTTETLRIEAPTVF 543
           PL + T     S  P+++  +  Q + T +NE++D ASEI   F +     +R   PT  
Sbjct: 462 PLSIKTSSGAGS--PAVAVPTHSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRP 519

Query: 544 TCIPMSNIVKQRQMEDKTKITQDYVHIPDKPVLQRAIAVLPSTLQL-RXGIVTPR*AT-- 714
           +    S+I K    ED + +  D +   ++ V      +    L L   G+++P   T  
Sbjct: 520 SSPVTSHISKVLFGEDDSLLRVDCIRY-NRAVRDLGPVISTGLLHLAEDGVLSPLALTEG 578

Query: 715 ----SPRVRFGPIXGIKRIISPNE 774
               SP +R  PI G +   SP E
Sbjct: 579 GKGSSPSIR--PIQGSQGSSSPVE 600


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,828,277
Number of Sequences: 237096
Number of extensions: 2083542
Number of successful extensions: 3697
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3696
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)