Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_P21
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    31   0.28 
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    29   0.84 
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    27   4.5  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   4.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   7.9  

>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -3

Query: 204 RVHPHQSLSRRHERRLFHVYIITNTKHLQLNTWFDCFDLHCLSREVNE 61
           R  PH++    ++  L  VY +  TKH  +  W +   +H    ++N+
Sbjct: 377 RKRPHEAGKDSYDTALLFVYYVMRTKHSDIQRWQNVLPIHGSFLDLNK 424


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 739 VRENLPCGAPVWITSSCERCQXSAV 813
           V+E  P G P W    C +CQ S V
Sbjct: 205 VKEKCPSGHPPWPAGICTKCQPSTV 229


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/75 (22%), Positives = 30/75 (40%)
 Frame = +3

Query: 456 QPVSPVVRNADFTRPAPRRHGSSSLPHPSLTASSKLALRRHLGSPRHPQPQFELPSPCST 635
           Q  S  V  +  + P P    SS +    ++ + K A+  +      PQP+    S    
Sbjct: 564 QGSSSSVTKSPESMPDPSAKASSPVTSKGVSINEKSAVNNYATPLSKPQPKDTKGSKLGN 623

Query: 636 TTIRPNQRCKVSSSP 680
           T + P+    + +SP
Sbjct: 624 TFVAPSPAASLPASP 638


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 579 LGSPRHPQPQFELPSPCSTTTIRPNQRCKVSSSPITS 689
           +G+P HP PQ  + S         +QR   S+SP  S
Sbjct: 198 VGTPMHPLPQQGVQSTLPVAPSNEDQRTMESTSPTDS 234


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 603  PQFELPSPCSTTT 641
            P FE+P PC+T T
Sbjct: 1222 PSFEIPEPCNTAT 1234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,870
Number of Sequences: 5004
Number of extensions: 56196
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)