Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_P17
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    64   2e-11
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   1.5  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    28   1.9  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    27   2.5  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    27   4.4  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    27   4.4  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    26   7.8  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 39/126 (30%), Positives = 67/126 (53%)
 Frame = +2

Query: 266 SDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQ 445
           S DEEE +RVV+S K+KRYEE    + +I+N     ++      F+ L K   +      
Sbjct: 162 SSDEEEGRRVVKSAKDKRYEEFISCMETIKNAMSSNNWIVVSNEFDHLNKVSQKC----- 216

Query: 446 KEENGVAPRFFIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKDFEAE 625
            +E G  P  +I  L  LD  +  A  ++   K+L   N +A  +L+Q++RK  + F+++
Sbjct: 217 -KEAGRNPPPYIEFLSALDQKLESA--DKAFIKSLDAANGRAFNALKQRVRKNNRQFQSD 273

Query: 626 ISKFRE 643
           I ++R+
Sbjct: 274 IDRYRK 279


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +2

Query: 266  SDDEEETKRVVRSMKE----KRYEELEGIIHSIRNHRKIKDFSSALASFEE-LQKAYTRA 430
            S +E E+  V    K+    K+ EE+  +   +  +  I DFS++ A F   +QK + + 
Sbjct: 1548 SSEEAESASVHADTKDLENLKKTEEMLSVTFQVIFNESISDFSTSTADFTTFVQKEWEKR 1607

Query: 431  APVVQKE 451
              ++QK+
Sbjct: 1608 REILQKD 1614


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 24/119 (20%), Positives = 48/119 (40%)
 Frame = +2

Query: 275 EEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEE 454
           +EET        ++  + LE +   +R   K +DF  +L    E       A P  +   
Sbjct: 598 QEETLIKANETIDQLTKMLEEVSDQLRYSLKERDFFRSLVQENEKLLDMAPATPNSKLNT 657

Query: 455 NGVAPRFFIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKDFEAEIS 631
           N +    + R+L+ L+       NE E+ K++S+   K        L+    + + +++
Sbjct: 658 NLIEQTSYQRSLIRLEQLT----NELESLKSISRNKEKKFEEAISSLQLEKSNIQLQLT 712


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/69 (24%), Positives = 35/69 (50%)
 Frame = +2

Query: 311 EKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEENGVAPRFFIRAL 490
           E  +  L  +++S ++H       S++  +  L K Y+++A  V   ENG+   +  R +
Sbjct: 116 EAAHRFLSSLVNSWKDHIVSMQMISSVLKY--LDKVYSKSADKVPVNENGI---YIFREV 170

Query: 491 VELDDWVVG 517
           V L+ + +G
Sbjct: 171 VLLNSFEIG 179


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 30/84 (35%), Positives = 41/84 (48%)
 Frame = +2

Query: 362 RKIKDFSSALASFEELQKAYTRAAPVVQKEENGVAPRFFIRALVELDDWVVGAWNEREAR 541
           ++++ F  AL SF      Y+ A  +V   ENG +P   I  L+EL    VG       R
Sbjct: 365 KRLRPFDKALKSF-----CYSDALDMVL--ENG-SPVLIITMLIELLH--VGG-----LR 409

Query: 542 KALSKGNSKALTSLRQKLRKYTKD 613
            ALS  +  +LT L   LRKY +D
Sbjct: 410 IALSNRDDLSLTPLINFLRKYIRD 433


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 242 APAPVYTFSDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEEL 409
           AP  + + +DD  E KR   + +++R       +HSI   R+  + SS   S  ++
Sbjct: 10  APVSLPSLNDDALEKKRAKENSRKQRELRRSSALHSITPRRESLNNSSPFNSSHQV 65


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
 Frame = -3

Query: 203 PSPSQLQRNDSYLQELVNALSYIKNRVGIQFSSNPLMIDLI-NL*RIERKLSNTDLAHDS 27
           P P   +    Y    +  L  +   VG      PL I    N   I RKL + DL H S
Sbjct: 410 PKPRNPKHGGRYAM-YIEWLMQLSEEVGWNIEVEPLRIPSTRNYALIGRKLLSNDLLHSS 468

Query: 26  LHT 18
           L T
Sbjct: 469 LST 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,314
Number of Sequences: 5004
Number of extensions: 50572
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)