Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_P17
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical pr... 116 2e-26
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 35 0.084
AC006651-8|AAX22286.1| 716|Caenorhabditis elegans Hypothetical ... 33 0.26
AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical ... 33 0.26
AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical ... 33 0.26
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 30 1.8
Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical pr... 29 5.5
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p... 29 5.5
U64849-3|AAC48050.2| 351|Caenorhabditis elegans Twik family of ... 29 5.5
AF077529-1|AAC26253.1| 690|Caenorhabditis elegans Hypothetical ... 29 5.5
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ... 28 7.3
Z82069-5|CAB04906.2| 739|Caenorhabditis elegans Hypothetical pr... 28 9.6
>Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical
protein T23D8.4 protein.
Length = 898
Score = 116 bits (280), Expect = 2e-26
Identities = 55/113 (48%), Positives = 82/113 (72%)
Frame = +2
Query: 275 EEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEE 454
EE+ KRVVR+ K+K+++EL+GII R+ + KD + L F+ L KAY ++ V Q++
Sbjct: 44 EEDEKRVVRAQKDKKFDELKGIIKQNRDAKSNKDLNRLLTGFDSLAKAYDKSKTVFQRQ- 102
Query: 455 NGVAPRFFIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKD 613
N PRF+IR+LVE++D+V W++++A+ ALSK N+KAL LRQKL+KY KD
Sbjct: 103 NVANPRFYIRSLVEIEDYVNKLWDDKDAKSALSKNNAKALPPLRQKLKKYIKD 155
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
B0207.5 protein.
Length = 3279
Score = 34.7 bits (76), Expect = 0.084
Identities = 22/56 (39%), Positives = 27/56 (48%)
Frame = +2
Query: 239 RAPAPVYTFSDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEE 406
R P Y+ DDE++ VR K K Y E EG + N RKI+ S S EE
Sbjct: 2319 RRPLRKYSRPDDEDDEFVDVRENKPKSYIEFEGFVKVRGNPRKIRKRPSFTDSGEE 2374
>AC006651-8|AAX22286.1| 716|Caenorhabditis elegans Hypothetical
protein H06I04.3b protein.
Length = 716
Score = 33.1 bits (72), Expect = 0.26
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +2
Query: 383 SALASFEELQKAYTRAAPVVQKEENGVAPRFFIRALVELDDWVVGAWNEREARKALSKGN 562
S L + EE +KA A V+ EEN + RA+ E+D+ + A + +A AL K
Sbjct: 319 SMLETLEEQRKAVEGEAKEVEIEENLTEEQLEDRAMAEIDELIAKASEDEKA--ALKKKK 376
Query: 563 SKALTSLRQKLRK 601
K L + + L++
Sbjct: 377 KKMLKAKARVLKR 389
>AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical
protein H06I04.3c protein.
Length = 786
Score = 33.1 bits (72), Expect = 0.26
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +2
Query: 383 SALASFEELQKAYTRAAPVVQKEENGVAPRFFIRALVELDDWVVGAWNEREARKALSKGN 562
S L + EE +KA A V+ EEN + RA+ E+D+ + A + +A AL K
Sbjct: 319 SMLETLEEQRKAVEGEAKEVEIEENLTEEQLEDRAMAEIDELIAKASEDEKA--ALKKKK 376
Query: 563 SKALTSLRQKLRK 601
K L + + L++
Sbjct: 377 KKMLKAKARVLKR 389
>AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical
protein H06I04.3a protein.
Length = 833
Score = 33.1 bits (72), Expect = 0.26
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +2
Query: 383 SALASFEELQKAYTRAAPVVQKEENGVAPRFFIRALVELDDWVVGAWNEREARKALSKGN 562
S L + EE +KA A V+ EEN + RA+ E+D+ + A + +A AL K
Sbjct: 319 SMLETLEEQRKAVEGEAKEVEIEENLTEEQLEDRAMAEIDELIAKASEDEKA--ALKKKK 376
Query: 563 SKALTSLRQKLRK 601
K L + + L++
Sbjct: 377 KKMLKAKARVLKR 389
>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
assigned gene nameprotein 278 protein.
Length = 1130
Score = 30.3 bits (65), Expect = 1.8
Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
Frame = +2
Query: 260 TFSDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPV 439
TFS+ E R ++ + ++ + + +K DF + + SF+ LQ + R
Sbjct: 151 TFSEYRERVAERERKLEAEYSGKIIALSEEVLGAKK--DFEARMKSFQALQDKFEREKEQ 208
Query: 440 V--------QKEENGVAPRFFIRALVELDD-WVVGAWNEREARKALSKGNSKALTSLRQK 592
QKE + RF L+ L+ +++ E RK+L + + K
Sbjct: 209 ALEKLRKEHQKEIQVLEQRFSDTQLLNLEQKYIIEIQRLEEERKSLRTEKERLGETFEMK 268
Query: 593 LRKYTKDFEAEIS 631
LR+ +E E++
Sbjct: 269 LRRAQSLYETELT 281
>Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical
protein C06C6.7 protein.
Length = 935
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 254 VYTFSDDEEETKRVVRSMKE-KRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRA 430
VY + R+ MKE K +++ I+ S++ RK+K + F+E+ A +++
Sbjct: 508 VYAEPHTQPLVTRLECLMKEIKNTDKIASILRSVKILRKLKSDRKLVEKFKEVSSAVSKS 567
Query: 431 APVV 442
P++
Sbjct: 568 LPLL 571
>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
protein C32E8.11 protein.
Length = 1927
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -3
Query: 257 KLAR--GRVLLARPRCCSLTPSPSQLQRNDSYLQELVNALSYIKNRVGIQFSSNPLMIDL 84
KLA+ G LL+ P S TP+P+Q+ + + LV + R + N L ID+
Sbjct: 1564 KLAQTPGSPLLSAPSTSSFTPAPAQIPHSGTNFAFLVQLFNPAGPRKNVNL--NILQIDI 1621
Query: 83 INL 75
++L
Sbjct: 1622 LSL 1624
>U64849-3|AAC48050.2| 351|Caenorhabditis elegans Twik family of
potassium channelsprotein 10 protein.
Length = 351
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 266 SDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFS 382
SD E+++R++R + EKRY+ L N K++DFS
Sbjct: 79 SDSHEKSQRILRRV-EKRYDILRETFLENVNRVKLEDFS 116
>AF077529-1|AAC26253.1| 690|Caenorhabditis elegans Hypothetical
protein C09E8.3 protein.
Length = 690
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +2
Query: 266 SDDEEETKRVVRSMKEKRYEELEGI--IHSIRNHRKI--KDFSSALASFEELQKAYT 424
SD+ +T++V R KEK +G+ + N KI + S + FE+L K+Y+
Sbjct: 383 SDEVTKTEKVFREKKEKELRGTDGVPLYFTKENATKILGNEEKSKIEVFEDLDKSYS 439
>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
protein Y39A1C.2 protein.
Length = 1066
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 272 DEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALAS-FEELQKAYTRAAPVVQ 445
+EEET+R + K L G + + H KIK F + F +L+K+ PV Q
Sbjct: 16 EEEETQRRRIELAHKLEPYLIGYLTRKKFHGKIKTFRPTFFNDFNDLEKSNKTLLPVAQ 74
>Z82069-5|CAB04906.2| 739|Caenorhabditis elegans Hypothetical
protein W04A8.6 protein.
Length = 739
Score = 27.9 bits (59), Expect = 9.6
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +2
Query: 266 SDDEEETKRVVRSMKEK----RYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAA 433
S +EE + R +K+K +Y IH R K+ SALA FE LQ T +
Sbjct: 660 SSEEERLSLIERQLKKKGGLVKYNPPRTKIHDKHYKRFGKNERSALAEFEYLQDMSTDVS 719
Query: 434 PVVQKEENG 460
+ E G
Sbjct: 720 GLQSSPELG 728
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,853,810
Number of Sequences: 27780
Number of extensions: 273306
Number of successful extensions: 870
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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