Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_P13
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III sub...    27   2.6  
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual     27   3.5  

>SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III
           subunit Rpb5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 100 DREIDSARHKQIPKHHDYVLNE--EYLASQKNRAKLITRIRPDEPVVADNVILESNVVKI 273
           D  ++   H+ +PKH     +E  E L   K R   + RI+  +PV     +    VVKI
Sbjct: 134 DLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLGLKRGEVVKI 193

Query: 274 VRPSK 288
           VR S+
Sbjct: 194 VRRSE 198


>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +1

Query: 109 IDSARHKQIPKHHDYVLNEEYLASQKNRAKLITRIRPDEPVVADNVILESNVVKI 273
           +D+ +H+  P H  +   EE++AS ++    +        V  +  + E +V+K+
Sbjct: 232 VDALKHEPYPSHFSFKQAEEFIASLEHVPSRVLYTGFSHKVEHNETVKELSVLKV 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,255
Number of Sequences: 5004
Number of extensions: 48886
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)