Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_P13
         (874 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J04965-1|AAA62401.1|  210|Homo sapiens RNA polymerase II 23kD su...    35   0.33 
D38251-1|BAA07406.1|  210|Homo sapiens RPB5 protein.                   35   0.33 
BC004441-1|AAH04441.1|  210|Homo sapiens polymerase (RNA) II (DN...    35   0.33 
AC004151-2|AAC03238.1|  210|Homo sapiens RPB5_Human protein.           35   0.33 
BC034144-1|AAH34144.1|  210|Homo sapiens polymerase (RNA) II (DN...    35   0.44 
BC000870-1|AAH00870.1|  301|Homo sapiens TIMELESS interacting pr...    31   7.2  
AK000523-1|BAA91229.1|  301|Homo sapiens protein ( Homo sapiens ...    31   7.2  

>J04965-1|AAA62401.1|  210|Homo sapiens RNA polymerase II 23kD
           subunit protein.
          Length = 210

 Score = 35.1 bits (77), Expect = 0.33
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 109 IDSARHKQIPKHHDYVLNE--EYLASQKNRAKLITRIRPDEPVVADNVILESNVVKIVRP 282
           I+   H+ +P+H      E  E LA  K R   + RI+  +PV     I    VVKI+RP
Sbjct: 137 INITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRP 196

Query: 283 SK 288
           S+
Sbjct: 197 SE 198


>D38251-1|BAA07406.1|  210|Homo sapiens RPB5 protein.
          Length = 210

 Score = 35.1 bits (77), Expect = 0.33
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 109 IDSARHKQIPKHHDYVLNE--EYLASQKNRAKLITRIRPDEPVVADNVILESNVVKIVRP 282
           I+   H+ +P+H      E  E LA  K R   + RI+  +PV     I    VVKI+RP
Sbjct: 137 INITEHELVPEHVVMTKEEVSELLARYKLRENQLPRIQAGDPVARYFGIRRGQVVKIIRP 196

Query: 283 SK 288
           S+
Sbjct: 197 SE 198


>BC004441-1|AAH04441.1|  210|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide E, 25kDa protein.
          Length = 210

 Score = 35.1 bits (77), Expect = 0.33
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 109 IDSARHKQIPKHHDYVLNE--EYLASQKNRAKLITRIRPDEPVVADNVILESNVVKIVRP 282
           I+   H+ +P+H      E  E LA  K R   + RI+  +PV     I    VVKI+RP
Sbjct: 137 INITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRP 196

Query: 283 SK 288
           S+
Sbjct: 197 SE 198


>AC004151-2|AAC03238.1|  210|Homo sapiens RPB5_Human protein.
          Length = 210

 Score = 35.1 bits (77), Expect = 0.33
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 109 IDSARHKQIPKHHDYVLNE--EYLASQKNRAKLITRIRPDEPVVADNVILESNVVKIVRP 282
           I+   H+ +P+H      E  E LA  K R   + RI+  +PV     I    VVKI+RP
Sbjct: 137 INITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRP 196

Query: 283 SK 288
           S+
Sbjct: 197 SE 198


>BC034144-1|AAH34144.1|  210|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide E, 25kDa protein.
          Length = 210

 Score = 34.7 bits (76), Expect = 0.44
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 109 IDSARHKQIPKHHDYVLNE--EYLASQKNRAKLITRIRPDEPVVADNVILESNVVKIVRP 282
           I+   H+ +P+H      E  E LA  K R   + RI+  +PV     +    VVKI+RP
Sbjct: 137 INITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGVKRGQVVKIIRP 196

Query: 283 SK 288
           S+
Sbjct: 197 SE 198


>BC000870-1|AAH00870.1|  301|Homo sapiens TIMELESS interacting
           protein protein.
          Length = 301

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 103 REIDSARHKQIPK--HHDYVLNEEYLASQKNRAKLITRIRPDEPVVADNVILESNVV 267
           R ++   H+  PK    D++   EYL S+K     + RIR D P++ ++ +  ++ V
Sbjct: 105 RHMEHWAHRLFPKLQFEDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEV 161


>AK000523-1|BAA91229.1|  301|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20516 fis, clone KAT10126. ).
          Length = 301

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 103 REIDSARHKQIPK--HHDYVLNEEYLASQKNRAKLITRIRPDEPVVADNVILESNVV 267
           R ++   H+  PK    D++   EYL S+K     + RIR D P++ ++ +  ++ V
Sbjct: 105 RHMEHWAHRLFPKLQFEDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEV 161


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,233,209
Number of Sequences: 237096
Number of extensions: 1809445
Number of successful extensions: 2907
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2907
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11104084400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)