Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_P12
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.47 
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    29   1.1  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    29   1.1  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    28   1.9  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   2.5  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   3.0  
SPCC14G10.03c |ump1||proteasome maturation factor Ump1 |Schizosa...    27   3.3  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    27   4.4  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   5.8  
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    26   7.6  
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc...    26   7.6  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 23/97 (23%), Positives = 34/97 (35%)
 Frame = +1

Query: 163 LPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTPYETG 342
           +P+ Q   NYQ Q   Y+Q    D +     L      P  +F+   G            
Sbjct: 29  MPINQGGMNYQQQTYPYQQPYQPDGYAGNTMLPFQQSQPATQFNNGFGYASQPTGSVADY 88

Query: 343 NNIQAQEQGYLKTVGDNQDNTALVQQGSYTYTAPGWS 453
              Q Q  GY   +    +NT  +Q    T   PG++
Sbjct: 89  GQQQQQMYGYNGMMPQTMNNTGFMQP-QQTGAIPGFA 124


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 538 LKFKKALTLSTPASRLTRNAPP*KPSQTPKLPDNKKRKPLSITKVNTTSNN 690
           L FKKA+        L +   P  P   P+LP+  K KP   T ++  + N
Sbjct: 217 LSFKKAVESIDSKQDLDKQDSPLPPDDAPELPNISKLKPKFHTLLDMLAEN 267


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -1

Query: 219 LSIFLLLGLIVVEVLFKWELVFHLLFWLQRNLPLGKSRRNGNKS 88
           L++   +GL+V+   + W + +HL++ L R  P+  + R    S
Sbjct: 14  LALPFRIGLLVIVGTWLWSVCYHLIYILNRYQPISPNPRGSLNS 57


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 565 STPASRLTRNAPP*KPSQTPKLPDNKKRKPLSITKVN 675
           STP +R T   PP    Q P  P+ K+    S  K N
Sbjct: 24  STPKARETTEPPPPSSQQPPSTPNGKEAASPSALKQN 60


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 172 EQNFNNYQPQQQEYRQAKPVDDFRPK-VQLETSTYIPIIRFDKEQGTDGSYKTPYETGNN 348
           +  F + + Q+++Y    P++  RP+ + +    YI I     + GTD ++    E   +
Sbjct: 178 QDEFEDEERQEEKYETGPPIESVRPEALGISDDDYIQIYEVFGD-GTDYAFALEDEDAED 236

Query: 349 IQAQEQGYLKTV 384
            + +E   LKT+
Sbjct: 237 -ELEESVSLKTI 247


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect(2) = 3.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 246  RSEVIDWFCLSIFL 205
            R +++ WFC+S+FL
Sbjct: 2194 RRKLVVWFCISVFL 2207



 Score = 20.6 bits (41), Expect(2) = 3.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 195  LIVVEVLFKWELVFHLLFWLQR 130
            LIV   +  W L+  +L W+ R
Sbjct: 2237 LIVAFYIVLWALLLGVLAWISR 2258


>SPCC14G10.03c |ump1||proteasome maturation factor Ump1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 129

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 130 SLKPEQQVEDQLPLEQNFNNYQPQQQEYR 216
           S+    +VE++ PLE    N++ QQQ+ R
Sbjct: 25  SIPAVHRVENKHPLESRLKNWEAQQQQIR 53


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 523 SPWYRLKFKKALTLSTPASRLTRN 594
           SPWY+  F      STPASR++RN
Sbjct: 332 SPWYKNNFGA----STPASRVSRN 351


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 118 QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQ 255
           Q++   + +QQ + Q   +Q     Q QQQ+ ++  P + F P  Q
Sbjct: 257 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQAPQNAFFPNPQ 302


>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 223 KPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTPYETGNNIQAQEQGYLKT 381
           KP+ D +PK + +T T + I R+   Q  +   K   +     + QE+ +  T
Sbjct: 106 KPMQDEKPKTEADTRT-LKIARYRMRQNLEKELKALSKDSETNEEQERKFWLT 157


>SPCC1919.09 |tif6||translation initiation factor
           eIF6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 504 VTTSLPLPLVSAEIQKGLDLIYAGIKAN 587
           +++ L +PLV+  I +G D+I AG+  N
Sbjct: 173 LSSLLQVPLVAGTINRGSDVIGAGLVVN 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,347,383
Number of Sequences: 5004
Number of extensions: 70353
Number of successful extensions: 269
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)