Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_P12
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743... 30 2.0
08_01_0589 + 5227520-5227637,5227819-5228375 29 3.5
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 29 4.6
02_02_0255 + 8357963-8358356,8358948-8359024,8359201-8359276,835... 29 4.6
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 29 6.1
05_05_0201 + 23206859-23206998,23207858-23207936,23208121-232082... 29 6.1
04_04_0136 - 23034715-23034794,23034930-23035104 29 6.1
04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334 29 6.1
03_04_0148 - 17708737-17709027,17709270-17709518,17709713-177098... 28 8.1
01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621... 28 8.1
>10_08_0573 + 18872720-18872781,18873261-18873610,18873917-18874334,
18875172-18877180,18877390-18877398,18880291-18880398,
18880399-18880469,18880769-18881785
Length = 1347
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 396 LVITDCLQITLLLSLNVVTSFIWSFVASVGSL 301
L I DC Q+T L L+ +TS +W +++ GS+
Sbjct: 1249 LEIIDCGQLTCLPDLDRLTSLLWMEISNCGSI 1280
>08_01_0589 + 5227520-5227637,5227819-5228375
Length = 224
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -3
Query: 508 VTGNSETELVSGVLDGNDLTI--QGLCMYRIPVGPEQCCLGYHRLSSNNP 365
VT N L S VL+ D+ + QGL ++ P Q + LSS NP
Sbjct: 130 VTSNPNNTLFSKVLNKGDVFVFPQGLIHFQFNPNPHQPAVAIAALSSQNP 179
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/68 (23%), Positives = 30/68 (44%)
Frame = +2
Query: 143 NSKWKTNSHLNKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTEAT 322
N KWK + + ++ K+ +S T + S+W+P P SP+ ++ P +
Sbjct: 518 NLKWKRSQEIKPVKFLSPLDTTDVKKEVESPTRERISSWKPFP-SPVPKPPKDPTPIKEE 576
Query: 323 KLHMKLVT 346
+ K T
Sbjct: 577 SPNKKTDT 584
>02_02_0255 +
8357963-8358356,8358948-8359024,8359201-8359276,
8359665-8359846,8360173-8360318,8360405-8360669,
8360688-8361053,8361265-8361513
Length = 584
Score = 29.1 bits (62), Expect = 4.6
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -1
Query: 396 LVITDCLQITLLLSLNVVTSFIWSFVASVGSLFLIETDNGDVGTGLQLDFRSEVIDWFCL 217
+ + + L + + L+L V W F + V + L+ + GL FR++ W C
Sbjct: 507 VTMNNTLCLAVFLALVYVRGLTWDFSSEVLIILLV-----CIIMGLFTSFRTDFPLWTCF 561
Query: 216 SIFLL--LGLIVVEVL 175
FLL L LI+V +L
Sbjct: 562 VAFLLYPLSLIMVYIL 577
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 115 PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDF-RPKVQL 258
PQ + + +QQ++ Q +Q++ Y P Q+Y+Q + +P+ Q+
Sbjct: 238 PQTPTAEQYQQQLQYQQYYQQHYPGYNPYMQQYQQYGQYQQYTQPQTQI 286
>05_05_0201 +
23206859-23206998,23207858-23207936,23208121-23208219,
23208561-23208674,23208762-23208910,23209010-23209091,
23209170-23209255,23209520-23209750,23209830-23210727
Length = 625
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 152 WKTNSHLNKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTEATK 325
W + +N T+ P+ + QN + S +N P P+SP + R + P+ ATK
Sbjct: 488 WAMPASVNSTNP-FQPATYQM--QNPPVASVAPTNTYPAPSSPYAAPPRQQVPSPATK 542
>04_04_0136 - 23034715-23034794,23034930-23035104
Length = 84
Score = 28.7 bits (61), Expect = 6.1
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2
Query: 233 STGFACLYSCCW 198
+TGFAC YSCC+
Sbjct: 2 ATGFACAYSCCY 13
>04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334
Length = 554
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 158 TNSHLNKTSTTISPSNRNIDKQNQSMTSDLKSNWRPV 268
T S L K S P +++++ MTS+ +W P+
Sbjct: 77 TTSELEKDSNAAKPCRSDMNREPTKMTSEATRSWCPI 113
>03_04_0148 -
17708737-17709027,17709270-17709518,17709713-17709851,
17710050-17710268,17710360-17710735,17711741-17711909
Length = 480
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 142 EQQVEDQLPLEQNFNNYQ-PQQQEYRQAKPVDDFRPKVQLETSTYIPIIRFDKEQ 303
E QVE L++ + + P + R A FR +LE YIP+ DKE+
Sbjct: 99 EAQVETTNQLKRIVDCIEKPLSNKVRHALETPSFRRMKRLEARLYIPLYEEDKEE 153
>01_04_0124 + 16359695-16359734,16360217-16360453,16361133-16362104,
16362211-16362398,16362564-16363942,16364024-16365047,
16365171-16365566,16367484-16367999,16368085-16368226,
16369409-16369553,16371351-16371432,16371851-16371895,
16372018-16372140
Length = 1762
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 552 GLDLIYAGIKANQERAAIEAKSNPEAARQQEEKAALDYKGQYYQQ*LTSAISQVN 716
G++L++ + RA KS A + + + + K Y+Q LTS ++QVN
Sbjct: 1322 GMELVHRNVGGFVLRAIYLTKSISLALQALQIRYGIPNKSNLYRQFLTSKVTQVN 1376
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,558,535
Number of Sequences: 37544
Number of extensions: 504715
Number of successful extensions: 1591
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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