Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_P12
         (840 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK094798-1|BAC04427.1|  346|Homo sapiens protein ( Homo sapiens ...    31   6.9  
AB066991-1|BAC02029.1|  122|Homo sapiens immunoglobulin heavy ch...    31   6.9  
BC050330-1|AAH50330.1| 1459|Homo sapiens ALMS1 protein protein.        30   9.1  
BC035025-1|AAH35025.1| 1459|Homo sapiens ALMS1 protein protein.        30   9.1  
AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein.        30   9.1  
AC096546-1|AAX82023.1| 1291|Homo sapiens unknown protein.              30   9.1  
AB002326-1|BAA20786.3| 2055|Homo sapiens KIAA0328 protein protein.     30   9.1  

>AK094798-1|BAC04427.1|  346|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37479 fis, clone BRAWH2013748, moderately
           similar to Actin binding LIM protein 1. ).
          Length = 346

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 75  DRNHRSYCRCGGSSPKEGFVEARTASGRPTPT*TKLQQLSAPATGI 212
           D++ RSY +C  SSP         + GR TPT    Q  S P TG+
Sbjct: 119 DQDDRSYKQCRTSSPSS---TGSVSLGRYTPTSRSPQHYSRPDTGV 161


>AB066991-1|BAC02029.1|  122|Homo sapiens immunoglobulin heavy chain
           VHDJ region protein.
          Length = 122

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 256 LETSTYIPIIRFDKEQGTDGSYK-TPYETGNNIQAQEQGYLKTVGDNQDNTALVQQGS 426
           L T  YI  IR    QG +   +  PY  G N+  Q QG++    D   NTA ++  S
Sbjct: 28  LFTGYYIHWIRQAPGQGLEWMGRMNPYSGGTNLAQQFQGWVTMTRDTSINTAYMELSS 85


>BC050330-1|AAH50330.1| 1459|Homo sapiens ALMS1 protein protein.
          Length = 1459

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 115  PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQ 219
            PQR   + PEQ  +  + L + +N Y+ +Q++ RQ
Sbjct: 1180 PQRDQKVTPEQTTQHTVSLNELWNKYRERQRQQRQ 1214


>BC035025-1|AAH35025.1| 1459|Homo sapiens ALMS1 protein protein.
          Length = 1459

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 115  PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQ 219
            PQR   + PEQ  +  + L + +N Y+ +Q++ RQ
Sbjct: 1180 PQRDQKVTPEQTTQHTVSLNELWNKYRERQRQQRQ 1214


>AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein.
          Length = 4169

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 115  PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQ 219
            PQR   + PEQ  +  + L + +N Y+ +Q++ RQ
Sbjct: 3581 PQRDQKVTPEQTTQHTVSLNELWNKYRERQRQQRQ 3615


>AC096546-1|AAX82023.1| 1291|Homo sapiens unknown protein.
          Length = 1291

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 115  PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQ 219
            PQR   + PEQ  +  + L + +N Y+ +Q++ RQ
Sbjct: 1022 PQRDQKVTPEQTTQHTVSLNELWNKYRERQRQQRQ 1056


>AB002326-1|BAA20786.3| 2055|Homo sapiens KIAA0328 protein protein.
          Length = 2055

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 115  PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQ 219
            PQR   + PEQ  +  + L + +N Y+ +Q++ RQ
Sbjct: 1514 PQRDQKVTPEQTTQHTVSLNELWNKYRERQRQQRQ 1548


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,624,209
Number of Sequences: 237096
Number of extensions: 2726173
Number of successful extensions: 9054
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8561
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)