Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_P12
(840 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70034-5|CAA93851.2| 197|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z83240-2|CAB05814.2| 360|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z81082-5|CAB03093.2| 429|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z73896-4|CAA98057.2| 503|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 29 4.1
AL132860-26|CAB60511.2| 700|Caenorhabditis elegans Hypothetical... 29 4.1
AF003385-5|AAB54245.1| 494|Caenorhabditis elegans Hypothetical ... 29 4.1
U80443-6|AAK68201.1| 643|Caenorhabditis elegans Ferm domain (pr... 29 5.4
U80443-5|AAD32269.1| 635|Caenorhabditis elegans Ferm domain (pr... 29 5.4
AL032647-2|CAA21689.1| 178|Caenorhabditis elegans Hypothetical ... 28 7.2
AF026208-2|AAB71269.3| 774|Caenorhabditis elegans Prion-like-(q... 28 7.2
Z70205-3|CAD44095.1| 191|Caenorhabditis elegans Hypothetical pr... 28 9.5
U00058-5|AAA50730.1| 309|Caenorhabditis elegans Hypothetical pr... 28 9.5
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 28 9.5
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 28 9.5
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 28 9.5
>Z70034-5|CAA93851.2| 197|Caenorhabditis elegans Hypothetical
protein C18E9.5 protein.
Length = 197
Score = 32.3 bits (70), Expect = 0.44
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -1
Query: 285 DNGDVGTGLQLDFRSEVIDWFCLSIFLLLGLIVV 184
D+ D G + + RSE++DW + I ++LGL+ +
Sbjct: 13 DDFDYGDNVSIIDRSEIVDWSAIVIKIILGLVFI 46
>Z83240-2|CAB05814.2| 360|Caenorhabditis elegans Hypothetical
protein T23H4.3 protein.
Length = 360
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +1
Query: 220 AKPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTPYETGNNIQAQEQGYLKTVGDNQD 399
+ P+ + RP + + P+ R+ K Q DG+Y PY N E+ +KT +
Sbjct: 49 SSPIRERRPIFRNALLSNSPL-RWSKMQDLDGNYLIPYVISGNYDTVERDTIKTAMEKIA 107
Query: 400 NTALVQ 417
N ++
Sbjct: 108 NNTCIR 113
>Z81082-5|CAB03093.2| 429|Caenorhabditis elegans Hypothetical
protein F42G4.2 protein.
Length = 429
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 140 QNSKWKTNSHLNKTSTTISPSNRNIDKQNQSMTSDLKSNW 259
+NSK + SH N + + PS+ DK SDL N+
Sbjct: 132 KNSKTSSESHKNDSDGSKEPSDNADDKNKPKFNSDLAKNF 171
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 118 QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETST 270
Q + ++P+QQ P+ N N QQ YR + RP VQ++ T
Sbjct: 23 QMRPVMQPQQQRTMYYPVRTNCQNRCNQQTRYRWNVRPTNIRPNVQVQIRT 73
>Z73896-4|CAA98057.2| 503|Caenorhabditis elegans Hypothetical
protein F09E8.6 protein.
Length = 503
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 179 TSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTE 316
T+TT P RN +K+N+S +S + T+P + + P E
Sbjct: 422 TTTTPKPVPRNKEKENKSASSTTRGTSTATSTTPKTTTTTTSAPKE 467
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +1
Query: 139 PEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPK-VQLETSTYI---PIIRFDKEQG 306
P+QQ + Q + Y+PQQQ+Y Q P D RP+ V+ YI P R +
Sbjct: 73 PQQQFQRQGQSQYIQQQYRPQQQQYSQ-YPRFDLRPQPVRPVRPVYIASTPASRLSYTER 131
Query: 307 TDGSYKTPYETGNNIQAQ 360
SY E N + +
Sbjct: 132 PQTSYGDEIEDTNYLSGR 149
>AL132860-26|CAB60511.2| 700|Caenorhabditis elegans Hypothetical
protein Y56A3A.32 protein.
Length = 700
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 115 PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLE 261
P++K KPE+ E + P QP+Q E +Q D PK Q++
Sbjct: 133 PEKKEEAKPEKPAEPKEPEPAQKQAEQPEQAEEKQ--ETKDAEPKEQVD 179
>AF003385-5|AAB54245.1| 494|Caenorhabditis elegans Hypothetical
protein R08F11.3 protein.
Length = 494
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 213 IFLLLGLIVVEVLFKWELVFHLLFWLQRNLPLG 115
+F +L L++ + +FHLL+W +RNLP G
Sbjct: 1 MFFILVLVLTGISI---YLFHLLYWKRRNLPPG 30
>U80443-6|AAK68201.1| 643|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 4,
isoform b protein.
Length = 643
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 140 QNSKWKTNSHLNKTSTTISPSNRNIDKQNQSMTSDLK-SNWRPVPTSP 280
QNS T H N S++ SP N N S ++L S R V TSP
Sbjct: 452 QNSLKVTTVHDNTASSSSSPDNSETQNNNLSKITNLNLSIEREVSTSP 499
>U80443-5|AAD32269.1| 635|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 4,
isoform a protein.
Length = 635
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 140 QNSKWKTNSHLNKTSTTISPSNRNIDKQNQSMTSDLK-SNWRPVPTSP 280
QNS T H N S++ SP N N S ++L S R V TSP
Sbjct: 444 QNSLKVTTVHDNTASSSSSPDNSETQNNNLSKITNLNLSIEREVSTSP 491
>AL032647-2|CAA21689.1| 178|Caenorhabditis elegans Hypothetical
protein Y57A10B.2 protein.
Length = 178
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +2
Query: 161 NSHLNKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTEATK 325
++H +S T SPS+ + S +S+ K + + ++PLS S + EP+ +T+
Sbjct: 86 STHFVTSSATASPSS------SSSSSSEYKKKVKRLSSNPLSSSTSSSEPSTSTR 134
>AF026208-2|AAB71269.3| 774|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 40
protein.
Length = 774
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +1
Query: 136 KPEQQVEDQLPLEQNFNNYQPQQ-QEYRQAKPVDDFRPKVQLETSTYIPIIRFDKEQGTD 312
+P+Q + Q +Q +N PQQ Q+ Q P + Q +IP + ++Q
Sbjct: 509 QPQQPQQQQFYNQQQYNAQTPQQVQQVHQQTPQQQVQQPHQPNQQPHIPSQQLPRQQAPQ 568
Query: 313 GSYKTP 330
+ P
Sbjct: 569 PAQNRP 574
>Z70205-3|CAD44095.1| 191|Caenorhabditis elegans Hypothetical
protein C11H1.8 protein.
Length = 191
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 137 SQNSKWKTNSHLNKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTS 277
++ S+ K N L KTS+T +PS +Q S + +N + + S
Sbjct: 45 AKRSRKKANGELPKTSSTAAPSLVRSSRQTDSYVNGTNNNSKKLSAS 91
>U00058-5|AAA50730.1| 309|Caenorhabditis elegans Hypothetical
protein W03A5.4 protein.
Length = 309
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 501 PVTTSLPLPLVSAEIQKGLDLIYAGIKANQERAAIEAK--SNPEAARQQEEKA 653
PVT P+VS E +K L A Q RA + A+ N +AA+ QE+ A
Sbjct: 252 PVTAKKKAPIVSEETRK--KLAEQKALAEQRRAEMRAQILQNRKAAKNQEDPA 302
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +2
Query: 179 TSTTIS--PSNRNIDKQNQSMTSD--LKSNWRPVPTSPLSVSIRNKEP 310
+ST IS P + + ++ S+ S L S+ PT PLSV++RN+ P
Sbjct: 467 SSTAISEVPHSLSHHQRTPSVASSIQLSSHMMNNPTHPLSVNVRNQSP 514
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +2
Query: 179 TSTTIS--PSNRNIDKQNQSMTSD--LKSNWRPVPTSPLSVSIRNKEP 310
+ST IS P + + ++ S+ S L S+ PT PLSV++RN+ P
Sbjct: 484 SSTAISEVPHSLSHHQRTPSVASSIQLSSHMMNNPTHPLSVNVRNQSP 531
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +2
Query: 179 TSTTIS--PSNRNIDKQNQSMTSD--LKSNWRPVPTSPLSVSIRNKEP 310
+ST IS P + + ++ S+ S L S+ PT PLSV++RN+ P
Sbjct: 596 SSTAISEVPHSLSHHQRTPSVASSIQLSSHMMNNPTHPLSVNVRNQSP 643
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,677,883
Number of Sequences: 27780
Number of extensions: 411159
Number of successful extensions: 1659
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1656
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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