Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_P10
(826 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29443-8|CAE45742.1| 455|Caenorhabditis elegans Hypothetical pr... 192 3e-49
Z29443-7|CAA82571.2| 497|Caenorhabditis elegans Hypothetical pr... 192 3e-49
U40483-1|AAA99775.1| 322|Caenorhabditis elegans NEX1 annexin pr... 136 2e-32
U00064-7|AAB52702.1| 322|Caenorhabditis elegans Annexin family ... 136 2e-32
Z32680-3|CAA83598.1| 317|Caenorhabditis elegans Hypothetical pr... 105 3e-23
U88315-15|AAB42365.1| 351|Caenorhabditis elegans Annexin family... 71 1e-12
Z81030-7|CAB02711.1| 366|Caenorhabditis elegans Hypothetical pr... 29 3.1
U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclas... 28 9.3
>Z29443-8|CAE45742.1| 455|Caenorhabditis elegans Hypothetical
protein T07C4.9b protein.
Length = 455
Score = 192 bits (468), Expect = 3e-49
Identities = 100/234 (42%), Positives = 138/234 (58%)
Frame = +3
Query: 105 TPTVYXXXXXXXXXXXXTLRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYGKDL 284
TP+V+ LRKAMKG G + +I +LC+R QR EI++ FK YGKDL
Sbjct: 140 TPSVFPVQGFNSNADAEVLRKAMKGLGCNNSKVISILCQRTNWQRQEISKAFKVMYGKDL 199
Query: 285 ISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTPSNYGIRTI 464
I ELK EL G+ E++I+ALM + AK+LH A+ G+GT E +IEI+ + +N I+ +
Sbjct: 200 IKELKGELHGDFEDLILALMDAPAIYDAKQLHRAMEGLGTKESVLIEIMTSRTNAQIQQV 259
Query: 465 SAFYEQLYGKSLESDLKGDTSGHFKRLCVSLCMANRDENQGIDXXXXXXXXXXXXXXXXX 644
Y+ L+ K LE DL G+TSGHFKRL VSLC RDE+ D
Sbjct: 260 RDAYKMLFKKDLERDLIGETSGHFKRLLVSLCAGGRDESSQTDGLRANQDARRLLQAGEK 319
Query: 645 QWGTDESIFNSILITRSYQQLRQIFAEYEALTGKDXEDSIXKKFSGXIEKGMLA 806
+ GTDES FN+IL ++++ QLR +F EY+ + E +I +FSG I G+LA
Sbjct: 320 RLGTDESTFNAILASQNFSQLRLVFEEYQKASNHSIEKAIEFEFSGDIRDGLLA 373
Score = 73.7 bits (173), Expect = 1e-13
Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Frame = +3
Query: 159 LRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYGKDLISELKSELTGNLEN---V 329
L+ K GTDE +L + Q + E ++ + ++ E +G++ +
Sbjct: 314 LQAGEKRLGTDESTFNAILASQNFSQLRLVFEEYQKASNHSIEKAIEFEFSGDIRDGLLA 373
Query: 330 IVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTPSNYGIRTISAFYEQLYGKSLESD 509
++A++ P ++AK LHD++ G+GT + +I + T + Y + I ++ LY SLE+
Sbjct: 374 VIAVIRNRPAYFAKLLHDSMKGLGTRDNDLIRLCVTRAEYDMGDIRNMFQSLYRTSLENM 433
Query: 510 LKGDTSGHFKRLCVSLCMANR 572
+KGD SG +K ++L NR
Sbjct: 434 IKGDCSGAYKEGLIALVNGNR 454
>Z29443-7|CAA82571.2| 497|Caenorhabditis elegans Hypothetical
protein T07C4.9a protein.
Length = 497
Score = 192 bits (468), Expect = 3e-49
Identities = 100/234 (42%), Positives = 138/234 (58%)
Frame = +3
Query: 105 TPTVYXXXXXXXXXXXXTLRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYGKDL 284
TP+V+ LRKAMKG G + +I +LC+R QR EI++ FK YGKDL
Sbjct: 182 TPSVFPVQGFNSNADAEVLRKAMKGLGCNNSKVISILCQRTNWQRQEISKAFKVMYGKDL 241
Query: 285 ISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTPSNYGIRTI 464
I ELK EL G+ E++I+ALM + AK+LH A+ G+GT E +IEI+ + +N I+ +
Sbjct: 242 IKELKGELHGDFEDLILALMDAPAIYDAKQLHRAMEGLGTKESVLIEIMTSRTNAQIQQV 301
Query: 465 SAFYEQLYGKSLESDLKGDTSGHFKRLCVSLCMANRDENQGIDXXXXXXXXXXXXXXXXX 644
Y+ L+ K LE DL G+TSGHFKRL VSLC RDE+ D
Sbjct: 302 RDAYKMLFKKDLERDLIGETSGHFKRLLVSLCAGGRDESSQTDGLRANQDARRLLQAGEK 361
Query: 645 QWGTDESIFNSILITRSYQQLRQIFAEYEALTGKDXEDSIXKKFSGXIEKGMLA 806
+ GTDES FN+IL ++++ QLR +F EY+ + E +I +FSG I G+LA
Sbjct: 362 RLGTDESTFNAILASQNFSQLRLVFEEYQKASNHSIEKAIEFEFSGDIRDGLLA 415
Score = 73.7 bits (173), Expect = 1e-13
Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Frame = +3
Query: 159 LRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYGKDLISELKSELTGNLEN---V 329
L+ K GTDE +L + Q + E ++ + ++ E +G++ +
Sbjct: 356 LQAGEKRLGTDESTFNAILASQNFSQLRLVFEEYQKASNHSIEKAIEFEFSGDIRDGLLA 415
Query: 330 IVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTPSNYGIRTISAFYEQLYGKSLESD 509
++A++ P ++AK LHD++ G+GT + +I + T + Y + I ++ LY SLE+
Sbjct: 416 VIAVIRNRPAYFAKLLHDSMKGLGTRDNDLIRLCVTRAEYDMGDIRNMFQSLYRTSLENM 475
Query: 510 LKGDTSGHFKRLCVSLCMANR 572
+KGD SG +K ++L NR
Sbjct: 476 IKGDCSGAYKEGLIALVNGNR 496
>U40483-1|AAA99775.1| 322|Caenorhabditis elegans NEX1 annexin
protein.
Length = 322
Score = 136 bits (328), Expect = 2e-32
Identities = 77/207 (37%), Positives = 118/207 (57%), Gaps = 2/207 (0%)
Frame = +3
Query: 189 DEKAIIDVLCRRGIVQRLEIAETFKTNYGKDLISELKSELTGNLENVIVALM-TPLPHFY 365
++ A+++V+ QR ++ E +K YGKD+I L + +G+LE I ALM TPL +
Sbjct: 31 EKDAVVNVITSISNAQRQQLREPYKLKYGKDIIQALDKKFSGDLEKAIFALMETPLD-YD 89
Query: 366 AKELHDAVSGIGTDEEAIIEILCTPSNYGIRTISAFYEQLYGKSLESDLKGDTSGHFKRL 545
K+L A+ G+GTDE +IEILC+ + +R I YE+ YGK+LE+D+ GDTSG F+ L
Sbjct: 90 VKQLKAAMKGLGTDEAVLIEILCSRTVDQLRAIRVTYEKEYGKALEADIAGDTSGEFRDL 149
Query: 546 CVSLCMANRDENQGIDXXXXXXXXXXXXXXXXXQWG-TDESIFNSILITRSYQQLRQIFA 722
VSL ++D + + + D + F IL T++ QLR++FA
Sbjct: 150 LVSLVTGSKDGSHDTNDAQAKDDAVRLFADGKAKLAKKDGTHFLHILATQNQYQLRKVFA 209
Query: 723 EYEALTGKDXEDSIXKKFSGXIEKGML 803
++ L G E SI K+FSG ++K L
Sbjct: 210 YFQELAGGSIEKSIEKEFSGDLQKSYL 236
Score = 77.4 bits (182), Expect = 1e-14
Identities = 58/229 (25%), Positives = 106/229 (46%), Gaps = 13/229 (5%)
Frame = +3
Query: 159 LRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYGKDLISELKSELTGNLENVIVA 338
L+ AMKG GTDE +I++LC R + Q I T++ YGK L +++ + +G +++V+
Sbjct: 93 LKAAMKGLGTDEAVLIEILCSRTVDQLRAIRVTYEKEYGKALEADIAGDTSGEFRDLLVS 152
Query: 339 LMTPLPHFY-----AKELHDAVSGIG--------TDEEAIIEILCTPSNYGIRTISAFYE 479
L+T A+ DAV D + IL T + Y +R + A+++
Sbjct: 153 LVTGSKDGSHDTNDAQAKDDAVRLFADGKAKLAKKDGTHFLHILATQNQYQLRKVFAYFQ 212
Query: 480 QLYGKSLESDLKGDTSGHFKRLCVSLCMANRDENQGIDXXXXXXXXXXXXXXXXXQWGTD 659
+L G S+E ++ + SG ++ +++ A D+ + GT
Sbjct: 213 ELAGGSIEKSIEKEFSGDLQKSYLTIVRAASDKQK---------FFAQQLHASMKGLGTR 263
Query: 660 ESIFNSILITRSYQQLRQIFAEYEALTGKDXEDSIXKKFSGXIEKGMLA 806
++ +++TRS L I AE++ L K D++ SG +L+
Sbjct: 264 DNDLIRVIVTRSEVDLELIKAEFQELYSKSLADTVKGDTSGAYRDALLS 312
Score = 66.1 bits (154), Expect = 3e-11
Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Frame = +3
Query: 189 DEKAIIDVLCRRGIVQRLEIAETFKTNYGKDLISELKSELTGNLEN---VIVALMTPLPH 359
D + +L + Q ++ F+ G + ++ E +G+L+ IV +
Sbjct: 188 DGTHFLHILATQNQYQLRKVFAYFQELAGGSIEKSIEKEFSGDLQKSYLTIVRAASDKQK 247
Query: 360 FYAKELHDAVSGIGTDEEAIIEILCTPSNYGIRTISAFYEQLYGKSLESDLKGDTSGHFK 539
F+A++LH ++ G+GT + +I ++ T S + I A +++LY KSL +KGDTSG ++
Sbjct: 248 FFAQQLHASMKGLGTRDNDLIRVIVTRSEVDLELIKAEFQELYSKSLADTVKGDTSGAYR 307
Query: 540 RLCVSLCMAN 569
+S+ N
Sbjct: 308 DALLSIINGN 317
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +3
Query: 651 GTDESIFNSILITRSYQQLRQIFAEYEALTGKDXEDSIXKKFSGXIEKGMLA 806
G +++ N ++ + S Q +Q+ Y+ GKD ++ KKFSG +EK + A
Sbjct: 30 GEKDAVVN-VITSISNAQRQQLREPYKLKYGKDIIQALDKKFSGDLEKAIFA 80
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 159 LRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYGKDLISELKSELTGNLENVIVA 338
L +MKG GT + +I V+ R V I F+ Y K L +K + +G + +++
Sbjct: 253 LHASMKGLGTRDNDLIRVIVTRSEVDLELIKAEFQELYSKSLADTVKGDTSGAYRDALLS 312
Query: 339 LM 344
++
Sbjct: 313 II 314
>U00064-7|AAB52702.1| 322|Caenorhabditis elegans Annexin family
protein 1 protein.
Length = 322
Score = 136 bits (328), Expect = 2e-32
Identities = 77/207 (37%), Positives = 118/207 (57%), Gaps = 2/207 (0%)
Frame = +3
Query: 189 DEKAIIDVLCRRGIVQRLEIAETFKTNYGKDLISELKSELTGNLENVIVALM-TPLPHFY 365
++ A+++V+ QR ++ E +K YGKD+I L + +G+LE I ALM TPL +
Sbjct: 31 EKDAVVNVITSISNAQRQQLREPYKLKYGKDIIQALDKKFSGDLEKAIFALMETPLD-YD 89
Query: 366 AKELHDAVSGIGTDEEAIIEILCTPSNYGIRTISAFYEQLYGKSLESDLKGDTSGHFKRL 545
K+L A+ G+GTDE +IEILC+ + +R I YE+ YGK+LE+D+ GDTSG F+ L
Sbjct: 90 VKQLKAAMKGLGTDEAVLIEILCSRTVDQLRAIRVTYEKEYGKALEADIAGDTSGEFRDL 149
Query: 546 CVSLCMANRDENQGIDXXXXXXXXXXXXXXXXXQWG-TDESIFNSILITRSYQQLRQIFA 722
VSL ++D + + + D + F IL T++ QLR++FA
Sbjct: 150 LVSLVTGSKDGSHDTNDAQAKDDAVRLFADGKAKLAKKDGTHFLHILATQNQYQLRKVFA 209
Query: 723 EYEALTGKDXEDSIXKKFSGXIEKGML 803
++ L G E SI K+FSG ++K L
Sbjct: 210 YFQELAGGSIEKSIEKEFSGDLQKSYL 236
Score = 77.4 bits (182), Expect = 1e-14
Identities = 58/229 (25%), Positives = 106/229 (46%), Gaps = 13/229 (5%)
Frame = +3
Query: 159 LRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYGKDLISELKSELTGNLENVIVA 338
L+ AMKG GTDE +I++LC R + Q I T++ YGK L +++ + +G +++V+
Sbjct: 93 LKAAMKGLGTDEAVLIEILCSRTVDQLRAIRVTYEKEYGKALEADIAGDTSGEFRDLLVS 152
Query: 339 LMTPLPHFY-----AKELHDAVSGIG--------TDEEAIIEILCTPSNYGIRTISAFYE 479
L+T A+ DAV D + IL T + Y +R + A+++
Sbjct: 153 LVTGSKDGSHDTNDAQAKDDAVRLFADGKAKLAKKDGTHFLHILATQNQYQLRKVFAYFQ 212
Query: 480 QLYGKSLESDLKGDTSGHFKRLCVSLCMANRDENQGIDXXXXXXXXXXXXXXXXXQWGTD 659
+L G S+E ++ + SG ++ +++ A D+ + GT
Sbjct: 213 ELAGGSIEKSIEKEFSGDLQKSYLTIVRAASDKQK---------FFAQQLHASMKGLGTR 263
Query: 660 ESIFNSILITRSYQQLRQIFAEYEALTGKDXEDSIXKKFSGXIEKGMLA 806
++ +++TRS L I AE++ L K D++ SG +L+
Sbjct: 264 DNDLIRVIVTRSEVDLELIKAEFQELYSKSLADTVKGDTSGAYRDALLS 312
Score = 66.1 bits (154), Expect = 3e-11
Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Frame = +3
Query: 189 DEKAIIDVLCRRGIVQRLEIAETFKTNYGKDLISELKSELTGNLEN---VIVALMTPLPH 359
D + +L + Q ++ F+ G + ++ E +G+L+ IV +
Sbjct: 188 DGTHFLHILATQNQYQLRKVFAYFQELAGGSIEKSIEKEFSGDLQKSYLTIVRAASDKQK 247
Query: 360 FYAKELHDAVSGIGTDEEAIIEILCTPSNYGIRTISAFYEQLYGKSLESDLKGDTSGHFK 539
F+A++LH ++ G+GT + +I ++ T S + I A +++LY KSL +KGDTSG ++
Sbjct: 248 FFAQQLHASMKGLGTRDNDLIRVIVTRSEVDLELIKAEFQELYSKSLADTVKGDTSGAYR 307
Query: 540 RLCVSLCMAN 569
+S+ N
Sbjct: 308 DALLSIINGN 317
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +3
Query: 651 GTDESIFNSILITRSYQQLRQIFAEYEALTGKDXEDSIXKKFSGXIEKGMLA 806
G +++ N ++ + S Q +Q+ Y+ GKD ++ KKFSG +EK + A
Sbjct: 30 GEKDAVVN-VITSISNAQRQQLREPYKLKYGKDIIQALDKKFSGDLEKAIFA 80
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 159 LRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYGKDLISELKSELTGNLENVIVA 338
L +MKG GT + +I V+ R V I F+ Y K L +K + +G + +++
Sbjct: 253 LHASMKGLGTRDNDLIRVIVTRSEVDLELIKAEFQELYSKSLADTVKGDTSGAYRDALLS 312
Query: 339 LM 344
++
Sbjct: 313 II 314
>Z32680-3|CAA83598.1| 317|Caenorhabditis elegans Hypothetical
protein C28A5.3 protein.
Length = 317
Score = 105 bits (253), Expect = 3e-23
Identities = 65/216 (30%), Positives = 106/216 (49%)
Frame = +3
Query: 159 LRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYGKDLISELKSELTGNLENVIVA 338
L KA++ ++ I+++L QR I +KT YGKDL E+K +G+ E+ +VA
Sbjct: 21 LEKALRN--KEKLKILEILVSVNNTQRQMIRTPYKTRYGKDLEDEIKKAFSGDFEDFLVA 78
Query: 339 LMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTPSNYGIRTISAFYEQLYGKSLESDLKG 518
L+ EL+ +V G+GT+E+ +IEIL T +N I Y Y KSLE +
Sbjct: 79 LLQTPTKLDVTELNRSVKGLGTNEKNLIEILTTRTNEEIEAAKNTYFMTYSKSLEDAISA 138
Query: 519 DTSGHFKRLCVSLCMANRDENQGIDXXXXXXXXXXXXXXXXXQWGTDESIFNSILITRSY 698
DTSG F+RL + + A R+E D + G ++ I T +
Sbjct: 139 DTSGDFRRLLIVILQAKREEGGFADTFKVGPHAAQILKSFDKKSGVEKFDAFKIFATCNG 198
Query: 699 QQLRQIFAEYEALTGKDXEDSIXKKFSGXIEKGMLA 806
++++ E E +GK+ + I K+ SG + +L+
Sbjct: 199 AHIQKVIEEVERQSGKEFQKLIDKELSGDFKNLVLS 234
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/102 (24%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Frame = +3
Query: 243 EIAETFKTNYGKDLISELKSELTGNLENVIVALMTPL---PHFYAKELHDAVSGIGTDEE 413
++ E + GK+ + EL+G+ +N++++L+ P ++A +H A G+GT ++
Sbjct: 203 KVIEEVERQSGKEFQKLIDKELSGDFKNLVLSLIETSRNKPRYFANSIHLATKGMGTRDK 262
Query: 414 AIIEILCTPSNYGIRTISAFYEQLYGKSLESDLKGDTSGHFK 539
+I IL + S + I ++ L+GK L +K + ++
Sbjct: 263 DLIRILVSRSENDLVIIEHEFQTLFGKPLTQLIKEECKAEYR 304
Score = 32.7 bits (71), Expect = 0.33
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +3
Query: 156 TLRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYGKDLISELKSELTGNLENVIV 335
++ A KG GT +K +I +L R + I F+T +GK L +K E + +
Sbjct: 249 SIHLATKGMGTRDKDLIRILVSRSENDLVIIEHEFQTLFGKPLTQLIKEECKAEYRDGLT 308
Query: 336 ALMTPLP 356
L+ P
Sbjct: 309 MLVKGNP 315
>U88315-15|AAB42365.1| 351|Caenorhabditis elegans Annexin family
protein 4 protein.
Length = 351
Score = 70.5 bits (165), Expect = 1e-12
Identities = 42/145 (28%), Positives = 71/145 (48%)
Frame = +3
Query: 156 TLRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYGKDLISELKSELTGNLENVIV 335
TLR ++ G T ++ II+ + QR +I ++ Y + L+ +L+ E G +
Sbjct: 33 TLRSSLHGLETKDQTIINTVLYHNNFQRQKILGAYEDMYSRKLLEDLEEECGGFFFEMCQ 92
Query: 336 ALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTPSNYGIRTISAFYEQLYGKSLESDLK 515
AL P P++ A+ ++ ++S D IEI CT S +R + Y+ Y KSL+ DL
Sbjct: 93 ALFKPAPNYDAQCVYKSLSNRHGDRSVAIEIACTRSPRQMRALRDTYQIDYRKSLDKDLT 152
Query: 516 GDTSGHFKRLCVSLCMANRDENQGI 590
G ++ L NR+E G+
Sbjct: 153 VKVEGVVGKMMHLLLCNNREEGLGV 177
>Z81030-7|CAB02711.1| 366|Caenorhabditis elegans Hypothetical
protein C01G10.9 protein.
Length = 366
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 654 TDESIFNSILITRSYQQLRQIFAEYEALT 740
TDE + N IL+ +YQ+L F + E LT
Sbjct: 147 TDEKLQNRILVWNAYQELLSAFPDKEKLT 175
>U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclase
protein 12 protein.
Length = 1280
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/74 (22%), Positives = 31/74 (41%)
Frame = +3
Query: 324 NVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTPSNYGIRTISAFYEQLYGKSLE 503
N I + + YAK +H+ V G D+ + R ++ Y + G +
Sbjct: 449 NRIACYLYDAVYLYAKAIHELVEEYGNDDS--YDPTADGKAIIDRIVNKKYRSIQGFDMR 506
Query: 504 SDLKGDTSGHFKRL 545
D +G++ G+F L
Sbjct: 507 IDERGNSKGNFSLL 520
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,365,662
Number of Sequences: 27780
Number of extensions: 322912
Number of successful extensions: 881
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -