Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_P07
         (842 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0924 - 9104908-9105366                                           33   0.38 
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552...    29   3.5  
04_04_0910 - 29321128-29321276,29321977-29322508,29323301-293237...    28   8.1  

>08_01_0924 - 9104908-9105366
          Length = 152

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = -3

Query: 441 IPXVSANAAFPVVFNXXVLENPPQKSS*SL*LCGVSNPNLHADAREGGSMRRP*PLALPH 262
           +  V A    P      ++  PP   + S  +  V++P    DA EGG+  RP P  +  
Sbjct: 84  VAVVMAGERMPTFLAAPIVRRPPSTDTSSSAVAEVASPENGCDAAEGGAASRPPPQPVAA 143

Query: 261 DNAITTSQ 238
             A+  +Q
Sbjct: 144 RQAVQLAQ 151


>05_02_0003 +
           5520331-5520476,5520572-5520644,5520762-5520928,
           5520929-5521223,5521531-5521674,5521756-5521890,
           5522004-5522093,5523702-5523809,5523905-5523986,
           5525362-5525417,5525888-5525986,5526090-5526394,
           5526898-5527075,5527167-5527280,5527376-5527507,
           5527614-5527718
          Length = 742

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 224 NILWCWLVVIALSWGRASGHGRLIEPPSRASAWRFGFDTPHNYNDHELFCGGFSR 388
           ++L C++V+I L +        LI PP R S W+ G    ++  D E   G F +
Sbjct: 220 DVLRCFMVIIYLDFKDFGIRNILIGPPPRISVWKGGMIKEYSKMD-ECKTGDFGK 273


>04_04_0910 -
           29321128-29321276,29321977-29322508,29323301-29323706,
           29323933-29324028,29324563-29324645,29326620-29326732,
           29327156-29327315
          Length = 512

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 200 TGSVIVKMNILWCWLVVIALSWGRASGHGRLIEPPSRASAWRFG 331
           T +V     +   W +V  +  GR+ G+G ++ P   A+ W FG
Sbjct: 358 TAAVAFPEGVARTWPMVGVMRHGRSDGNGEVVRP--EAAVWPFG 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,573,451
Number of Sequences: 37544
Number of extensions: 372809
Number of successful extensions: 651
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)