Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_P06
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce...    33   0.067
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   4.4  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    26   7.7  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   7.7  

>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 32.7 bits (71), Expect = 0.067
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
 Frame = +3

Query: 75  ANAKSEKPASSEDKDTPIRQIMTIIEHKIR--NLEKRKSKLTSYRDLQKAGKELNSDQKV 248
           A+  +++   ++++DTP+  +    +  +R  N EK+ SKL + R  ++  KE+      
Sbjct: 72  ADILNQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKLRTSRRRERLRKEMVGRVTS 131

Query: 249 AVAKYDEVAQTLXICKRSLK 308
            VA   E A+ L   +R L+
Sbjct: 132 VVAVNAETAKALFTHERELR 151


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -2

Query: 572 SSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPI 441
           SSF      TS Y+ S+ FK SSV L +     +    AS+LPI
Sbjct: 440 SSFLIISTFTSSYEHSEPFKVSSVPLTSNNFSSISHSSASSLPI 483


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +3

Query: 96  PASSEDKDTPI--RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDE 269
           P   ED   P    Q    I       +K+K+      +LQ AGK+L + Q+   A Y +
Sbjct: 134 PTDQEDPRNPQLDSQYEAFITQGESQTDKKKTSTVQEEELQNAGKKLETVQENPQA-YSK 192

Query: 270 VAQ 278
           V Q
Sbjct: 193 VTQ 195


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 19/81 (23%), Positives = 33/81 (40%)
 Frame = +3

Query: 72  AANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVA 251
           A   K E  AS  +KD   R    +I    + L +R+  ++   DLQ    +        
Sbjct: 747 AERLKGELNASKGEKDLRKRTQERLISENDKLLAERERLMSLVSDLQTFLNQQQLSDAAR 806

Query: 252 VAKYDEVAQTLXICKRSLKAS 314
             K++   ++L +  + LK S
Sbjct: 807 KVKFESEKESLSLSLQKLKES 827


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,566
Number of Sequences: 5004
Number of extensions: 56016
Number of successful extensions: 181
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)