Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_P02
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    31   0.21 
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   2.6  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    27   3.4  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    26   6.0  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    26   7.9  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   7.9  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 275 QEVSNGPDMGRKIPNRIPVRDENDCDTRAYIKDDSVKIVTLMSAPI-IPNSA 427
           Q+ S  P  G ++PN      +N+ + +  +K+DS K     SAPI +P S+
Sbjct: 28  QKKSISPSSGSELPNFKTTISQNNEEVKTSLKEDSSKFHPSASAPIFVPTSS 79


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +2

Query: 311 IPNRIPVRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERVGMV 469
           +P  IPV  E+  DT+A +K  S + +T +   +I N+  DI R + E +  +
Sbjct: 173 LPQIIPVVSESMWDTKAEVKKQSKETMTKV-CTLIANA--DIDRFIPELINCI 222


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 20/82 (24%), Positives = 33/82 (40%)
 Frame = +2

Query: 596 DSHVAFLNKQLLMDLLFKCVSTGDYDKAVTITKSLQDDNVGFMIEELIDRLLRARKPNVF 775
           D+   F +    + LLFKC     Y         L+ D +   I  L+D+LL+  K ++ 
Sbjct: 517 DACTVFKSTMQPLRLLFKCQDGSKYPIIFKNGDDLRQDQLVIQILTLMDKLLKKEKLDLH 576

Query: 776 AYADXLWSAGHHDIXNDFFPSE 841
                + + G       F PS+
Sbjct: 577 LKPYRILATGPTHGAVQFVPSK 598


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 377 SVKIVTLMSAPIIPNSARDITRIVNERVGMVVICGMPVES 496
           ++KI+     P+I  S+ D  RI+       V C M +++
Sbjct: 30  TIKILDRAPPPVIDGSSVDANRIIRSDYADAVYCSMGIDA 69


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +2

Query: 110 KYPYSDLPYIGQYKLLKLPFTGKLIEHVDYWGEGSIVNGGLYS 238
           K+  +  PY+ Q   LKL FTGKL     Y+     V G L S
Sbjct: 12  KWKVAVSPYLYQLSNLKLLFTGKLNFADFYYNTNPFVVGLLLS 54


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = -1

Query: 219 TILPSPQ*STCSISFPVKGSLSSLYCPMYGRSEYGYFRSTLVT*LGSLSCGSIIVCSFAH 40
           T++ +      S S P   S SSL       +  G     +V  LG L    II     H
Sbjct: 62  TVISTQNPEPTSASTPPSASASSLPNGAQKHNHTGVIAGPIVGVLGGLIVLVIIFYCLRH 121

Query: 39  YRQDKYIVE 13
           +++ K++ E
Sbjct: 122 FKRKKFLAE 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,945
Number of Sequences: 5004
Number of extensions: 61811
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)